Job Description P10026 Confidence 2.84% Date Thu Jan 5 11:31:57 GMT 2012 Rank 82 Aligned Residues 50 % Identity 12% Template c2xi1A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample Resolution 3.50 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	K	T	Q	S	S	V	A	K	I	L	G	I	E	S	L	S	P	H	V	S	G	N	S	K	F	E	Y	A	N	M	V	E	D	I	R	E	K	V	S	S	E	M	E	R	F	F	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	L	R	P	M	T	Y	K	G	A	V	D	L	S	F	F	L	K	E	K	G	G	L	E	G	L	V	Y	S	Q	R	E	K	E	I	L	D	L	W	V	Y	H	T	Q	G	Y	F	P	D
Template Known Secondary structure					B																	T	S	T	T	T	T		B																			B		S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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