Job Description P10026 Confidence 10.76% Date Thu Jan 5 11:31:57 GMT 2012 Rank 13 Aligned Residues 84 % Identity 14% Template c2r17C_ PDB info PDB header:protein transport Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 35; PDBTitle: functional architecture of the retromer cargo-recognition complex Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.																	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	Y	E	K	I	N	A	I	I	E	K	R	R	Q	E	G	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	D	V	S	F	S	A	T	A	S	M	L	L	E	L	G	L	R	V	H	E	A	Q	M	E	R	K	E	S	A	F	N	Q	T	E	F	N	K	L	L	L	E	C	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	F	S	F	A	H	Q	T	I	S	A	L	I	K	A	E	L	A	E	L	P	L	R	L	F	L	Q	G	A	L	A	A	G	E	I	G	F	E	N	H	E	T	V	A	Y	E	F	X	S	Q	A	F	S	L	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	I
Template Known Secondary structure																	T	T																						T	T																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.																					.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	T	Q	S	S	V	A	K	I	L	G	I	E	S	L	S	P	H	V	S	G	N	S	K	F	E	Y	A	N	M	V	E	D	I	R	E	K	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	S	K	A	Q	L	A	A	I	T	L	I	I	G	T	F	E	R	X	K	C	F	S	E	E	N	H	E	P	L	R	T	Q	C	A	L	A	A	S
Template Known Secondary structure																			T	T
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions