Job Description P34749 Confidence 99.71% Date Thu Jan 5 11:53:09 GMT 2012 Rank 5 Aligned Residues 151 % Identity 14% Template c3ezjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		V	T	L	M	V	D	D	V	P	V	A	Q	V	L	Q	A	L	A	E	Q	E	K	L	N	L	V	V	S	P	D	V	S	G	T	V	S	L	H	L	.	.	.	.	T	D	V	P	W	K	Q	A	L	Q	T	V	V	K	S	A	G	L	I	T	R	Q	E	G	N	I	L	S	V	H	S	I	A	W	Q	N	N
Query Conservation																																									.	.	.	.
Alig confidence																													.	.	.										.	.	.	.																																		.	.	.	.
Template Conservation																													.	.	.																																															.	.	.	.
Template Sequence		F	T	A	N	F	K	D	T	D	L	K	S	F	I	E	T	V	G	A	N	L	N	K	T	I	I	M	.	.	.	V	Q	G	A	V	S	I	R	T	M	T	P	L	N	E	R	Q	Y	Y	Q	L	F	L	N	L	L	E	A	Q	G	Y	A	V	V	P	M	E	N	D	V	L	K	V	V	K	S	.	.	.	.
Template Known Secondary structure		B																					T						.	.	.										S	S		B																T	T							T	T	T								.	.	.	.
Template Predicted Secondary structure																													.	.	.																																															.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		N	I	A	R	Q	E	A	E	Q	A	R	A	Q	A	N	L	P	L	E	N	R	S	I	T	L	Q	Y	A	D	A	G	E	L	A	K	A	G	E	K	L	L	S	A	.	.	K	G	S	M	T	V	D	K	R	T	N	R	L	L	L	R	D	N	K	T	A	L	S	A	L	E	Q	W	V	A	Q	M	D	L	P
Query Conservation																																													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	E	M	V	T	K	V	V	P	V	R	N	V	S	V	R	E	L	A	P	I	L	R	Q	M	I	D	S	A	G	S	G	N	V	V	N	Y	D	P	S	N	V	I	M	L	T	G	R	A	S	V	V	E	R	L	T	E	V	I	Q	R	V	D	H	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S		G	G	G	T													S	S							T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	Q	V	E	L	S	A	H	I	V	T	I	N	E	K	S	L	R	E	L
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		G	N	R	.	.	.	T	E	E	V	I	P	L	D	N	A	S	A	S	E	I
Template Known Secondary structure		T	T		.	.	.								S	S	S
Template Predicted Secondary structure					.	.	.
Template SS confidence
		166	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions