Job Description P34749 Confidence 99.86% Date Thu Jan 5 11:53:09 GMT 2012 Rank 2 Aligned Residues 131 % Identity 17% Template c2y9kG_ PDB info PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution Resolution 8.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		L	M	V	D	D	V	P	V	A	Q	V	L	Q	A	L	A	E	Q	E	K	L	N	L	V	V	S	P	D	V	.	S	G	T	V	S	L	H	L	T	D	V	P	W	K	Q	A	L	Q	T	V	V	K	S	A	G	L	I	T	R	Q	E	G	N	I	L	S	V	H	S	I	A	W	Q	N	N	N	I	A	R	Q
Query Conservation																															.
Alig confidence																															.																																													.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		F	V	A	K	D	D	S	L	R	T	F	F	D	A	M	A	L	Q	L	K	E	P	V	I	V	S	K	M	A	A	R	K	K	I	T	G	N	F	E	F	H	D	P	N	A	L	L	E	K	L	S	L	Q	L	G	L	I	W	Y	F	D	G	Q	A	I	Y	I	Y	D	A	S	E	M	R	.	.	.	.	.	.
Template Known Secondary structure																				T	T												S								S															T							S	S							G	G	G			.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		E	A	E	Q	A	R	A	Q	A	N	L	P	L	E	N	R	S	I	T	L	Q	Y	A	D	A	G	E	L	A	K	A	G	E	.	.	K	L	L	S	A	K	G	S	M	T	V	D	K	R	T	N	R	L	L	L	R	D	N	K	T	A	L	S	A	L	E	Q	W	V	A	Q	M	D	L
Query Conservation																																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	V	V	S	L	R	N	V	S	L	N	E	F	N	N	F	L	K	R	S	G	L	Y	N	K	N	Y	P	L	R	G	D	N	R	K	G	T	F	Y	V	S	G	P	P	V	Y	V	D	M	V	V	N	A	A	T	M	M	D	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S												T	T				S	S	S						S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions