Job Description P34749 Confidence 99.80% Date Thu Jan 5 11:53:09 GMT 2012 Rank 4 Aligned Residues 131 % Identity 31% Template c2y3mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:protein transport protein hofq; PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans Resolution 2.30 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	Q	K	V	T	L	M	V	D	D	V	P	V	A	Q	V	L	Q	A	L	A	E	Q	E	K	L	N	L	V	V	S	P	D	V	S	G	T	V	S	L	H	L	T	D	V	P	W	K	Q	A	L	Q	T	V	V	K	S	A	G	L	I	T	R	Q	E	G	N	I	L	S	V	H	S	I	A	W	Q	N	N
Query Conservation
Alig confidence																																			.	.	.	.	.																																								.	.	.
Template Conservation																																			.	.	.	.	.																																								.	.	.
Template Sequence		Q	N	P	V	F	S	I	R	L	K	Q	A	P	L	V	P	T	L	Q	Q	L	A	L	A	H	N	T	N	L	I	I	D	T	.	.	.	.	.	V	S	L	Q	L	E	N	V	D	L	D	Q	L	F	R	S	V	A	K	I	K	Q	L	D	L	W	Q	E	N	G	I	Y	Y	F	T	K	A	Q	L	.	.	.
Template Known Secondary structure																						S				T	T								.	.	.	.	.								S														T																		.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.																																								.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		N	I	A	R	Q	E	A	E	Q	A	R	A	Q	A	N	L	P	L	E	N	R	S	I	T	L	Q	Y	A	D	A	G	E	L	A	K	A	G	E	K	.	.	.	.	L	L	S	A	K	G	S	M	T	V	D	K	R	T	N	R	L	L	L	R	D	N	K	T	A	L	S	A	L	E	Q	W	V	A	Q	M	D
Query Conservation																																									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	A	T	I	K	L	H	F	A	K	A	S	E	V	M	K	S	L	T	G	G	S	G	S	L	L	S	P	N	G	S	I	T	F	D	D	R	S	N	L	L	L	I	Q	D	E	P	R	S	V	R	N	I	K	K	L	I	K	E	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S												S	S	S		S	S		T	T							T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		176
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		191

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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