Job Description P0AA78 Confidence 4.86% Date Thu Jan 5 11:12:08 GMT 2012 Rank 24 Aligned Residues 427 % Identity 7% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.																										.	.	.	.	.	.	.
Query SS confidence																																																	.																										.	.	.	.	.	.	.
Query Sequence		R	F	Y	M	R	K	I	K	G	L	R	W	Y	M	I	A	L	V	T	L	G	T	V	L	G	Y	L	T	R	N	T	V	A	A	A	A	P	T	L	M	E	E	L	N	I	S	T	.	Q	Q	Y	S	Y	I	I	A	A	Y	S	A	A	Y	T	V	M	Q	P	V	A	G	Y	V	L	.	.	.	.	.	.	.
Query Conservation																																																	.																										.	.	.	.	.	.	.
Alig confidence											.																																						.																										.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		E	N	S	V	H	R	Y	K	K	.	E	A	S	N	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N
Template Known Secondary structure			T	T							.																																		T	T	T	T	T	T																								G	G	G		T	T	S
Template Predicted Secondary structure											.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.														.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	V	L	G	T	K	I	G	Y	A	M	F	A	V	L	W	A	V	F	C	G	A	T	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	W	G	G	L	A	V	A	R	G	A	V	G	A	A	E	A	A	M	I	P	A	G	L	K	A	S	S	E	W	F	P	A	K	E	R	S
Query Conservation		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T
Template Known Secondary structure		S	S	S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	G	Y	F	N	V	G	S	S	I	G	A	M	I	A	P	P	L	V	V	W	A	I	V	M	H	S	W	Q	M	A	F	I	I	S	G	A	L	S	F	I	W	A	M	A	W	L	I	F	Y	K	H	P	R	D	Q	K	H	L	T	D	E	E	R	D	Y	I	I	N	G	Q	E	A	Q	H	Q	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R
Template Known Secondary structure																								T	T		S	S																														T		T	T												S	S	T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	K	K	M	S	V	G	Q	I	L	R	N	R	Q	F	W	G	I	A	L	P	R	F	L	A	E	P	A	W	G	T	F	N	A	W	I	P	L	F	M	F	K	V	Y	G	F	N	L	K	E	I	A	M	F	A	W	M	P	M	L	F	A	D	L	G	C	I	L	G	G	Y	L	P	P	L	F	Q	R	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V
Template Known Secondary structure		T																									T			S		S	T					T	T																											G	G	G	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	N	L	I	V	S	R	K	M	V	V	T	L	G	A	V	L	M	I	G	P	G	M	I	G	L	F	T	N	P	Y	V	A	I	M	L	L	C	I	G	G	F	A	H	Q	A	L	S	G	A	L	I	T	L	S	S	D	V	F	G	R	N	E	V	A	T	A	N	G	L	T	G	M	S	A	W	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V
Template Known Secondary structure																											T	S	S		S	S	T	T																													G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		414	.	.	.	.	.	420	.	.	.	.	.	.						.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		S	T	L	F	A	L	V	V	G	A	L	A	D	.	.	.	.	.	T	I	G	F	S	P	L	F	A	V	L	A	V	F	D	L	L	G	A	L	V	I	W	T	V	L	Q	N	K	P	A	I	E	V	A	Q	E	T	H
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H
Template Known Secondary structure															S	S	S			S																					T	G	G	G	S	T	T	T			S	S		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.