Job Description P0AF98 Confidence 3.62% Date Thu Jan 5 11:25:41 GMT 2012 Rank 21 Aligned Residues 112 % Identity 14% Template c2bg9C_ PDB info PDB header:ion channel/receptor Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain; PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution. Resolution 4.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		Y	L	V	R	E	T	L	K	S	Q	L	A	I	L	F	I	L	L	L	I	F	F	C	Q	K	L	V	R	I	L	G	A	A	V	D	G	D	I	P	A	N	L	V	L	S	L	L	G	L	G	V	P	E	M	A	Q	L	I	L	P	L	S	L	F	L	G	L	L	M	T	L	G	K	L	Y	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		Y	V	I	N	F	I	T	P	C	V	L	I	S	F	L	A	A	L	A	F	Y	L	P	A	E	S	G	E	K	M	S	T	A	I	C	V	L	L	A	Q	A	V	F	L	L	L	T	S	Q	R	L	P	E	T	A	L	A	V	P	L	I	G	K	Y	L	M	F	I	M	S	L	V	T	G	V	V	V	N	C	G
Template Known Secondary structure																												T	T																													T	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
																																	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	S	E	I	T	V	M	H	A	C	G	L	S	K	A	V	L	V	K	A	A	M	I	L	A	V	F	T	A	I	V	A	A	V	N	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	L	N	F	H	F	R	T	P	S	T	H	S	G	I	D	S	T	N	Y	I	V	K	Q	I	K	E	K	N	A	Y	D	E	E	V	G	N	W	N	L	V	G	Q	T	I	D	R	L	S	M	F	I	I	T	P	V	M	V	L	G	T	I	F	I	F	V	M
Template Known Secondary structure										S	T	T	T																																T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions