Job Description P0ABY4 Confidence 99.58% Date Thu Jan 5 11:16:42 GMT 2012 Rank 42 Aligned Residues 165 % Identity 13% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.																							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	M	G	L	F	Y	G	S	S	T	C	Y	T	E	M	A	A	E	K	I	R	D	I	I	G	P	E	L	V	T	L	H	N	L	K	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	L	M	E	Q	Y	D	V	L	I	L	G	I	P	T	W	D	F
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation											.																																																																					.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	Y	G	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	M	R	W	A	D	G	F	A	I	G	S	P	T	R	.	Y
Template Known Secondary structure											.	S	S																	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B										S									B	.	T
Template Predicted Secondary structure											.																																																																					.
Template SS confidence
		5	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		G	E	I	Q	E	D	W	E	A	V	W	D	Q	L	D	D	.	.	.	.	L	N	L	E	G	K	I	V	A	L	Y	G	L	G	D	Q	L	G	Y	G	E	W	F	L	D	A	L	G	M	L	H	D	K	L	S	T	K	G	V	K	F	V	G	Y	W	P	T	E	G	Y	E	F	T	S	P	K	P	V	I	A
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																							.	.
Template Conservation																																												.	.
Template Sequence		G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	G	H	E	.	.	T	T	I	L	T	M	S	T	Y	A	Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	F	Q	T	T	T	G	G	G	P
Template Known Secondary structure		T	B											T	T					T	T	T	T	T	T	T									B	S	S	T	T	S	S	S	S	.	.							T							T							T	T		S	T						S	S	S		B	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	Q	L	F	V	G	L	A	L	D	E	T	N	Q	Y	D	L	S	D	E	R	I	Q	S	W	C	E	Q	I	L	N	E	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E	V	A	K	A	I	K
Template Known Secondary structure		T	B				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions