Job Description P0ABY4 Confidence 100.00% Date Thu Jan 5 11:16:42 GMT 2012 Rank 4 Aligned Residues 166 % Identity 39% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70
Predicted Secondary structure				.																												.																																			.	.	.	.	.	.	.	.
Query SS confidence				.																												.																																			.	.	.	.	.	.	.	.
Query Sequence		M	N	.	M	G	L	F	Y	G	S	S	T	C	Y	T	E	M	A	A	E	K	I	R	D	I	I	G	P	E	L	.	V	T	L	H	N	L	K	D	D	S	P	K	L	M	E	Q	Y	D	V	L	I	L	G	I	P	T	W	D	F	G	E	I	Q	E	.	.	.	.	.	.	.	.	D	W	E	A	V	W	D
Query Conservation				.																												.																																			.	.	.	.	.	.	.	.
Alig confidence				.																												.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	A	K	I	G	L	F	F	G	S	D	T	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	E	V	M	A	K	P	L	N	V	N	R	A	D	V	A	D	F	M	A	Y	D	F	L	I	L	G	T	P	T	L	G	D	G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P
Template Known Secondary structure				S								S	S	S											T	T	S		T	T	T	B						G	G	G										S									B	T	T	T	B		S	S	G	G	G	T		S	S							G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	D	D	L	N	L	E	G	K	I	V	A	L	Y	G	L	G	D	Q	L	G	Y	G	E	W	F	L	D	A	L	G	M	L	H	D	K	L	S	T	K	G	V	K	F	V	G	Y	W	P	T	E	G	Y	E	F	T	S	P	K	P	V	I	A	D	G	Q	L	F	V	G	L	A	L	D	E	T	N	Q	Y
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence		R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G	Y	G	F	E	D	S	L	A	V	V	E	G	E	.	.	F	L	G	L	A	L	D	Q	D	N	Q	A
Template Known Secondary structure		G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T	S			S			T	T			T	T		.	.		S	S					T	T	T		G
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	S	D	E	R	I	Q	S	W	C	E	Q	I	L	N	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	T	P	E	R	L	K	G	W	L	S	L	I	A	A	D	F
Template Known Secondary structure		G	G												T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions