Phyre 2 alignment of P69506 with c2p5zX

Job Description P69506
Confidence 23.66% Date Thu Jan 5 12:11:46 GMT 2012

Rank 36 Aligned Residues 39

% Identity 15% Template c2p5zX_

PDB info PDB header:structural genomics, unknown function Chain: X: PDB Molecule:type vi secretion system component; PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																		.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Query Sequence	A	Y	R	D	Q	P	L	G	E	L	A	L	S	I	P	R	A	S	A	L	F	R	K	Y	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	C	C	G	G	K	Q	T	.	.	.	.	L	A	R	A	A	A	R	K	E	L
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Alig confidence													.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence	I	Y	Q	N	Q	T	V	P	Q	I	V	E	.	.	.	.	.	.	K	I	L	R	E	R	H	Q	M	R	G	Q	D	F	V	F	N	L	K	S	E	Y	P	A	R	E	Q	V	M	Q	Y	G	E	D	D	L	T	F	V	S	R	L	L	S	E	V	G	I
Template Known Secondary structure													.	.	.	.	.	.					T	T	T				S	S	S						S	S												S															T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
	123	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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