Job Description P0AA41 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 10 Aligned Residues 148 % Identity 20% Template c3dh3C_ PDB info PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	Y	Q	D	E	W	L	V	A	V	N	K	P	S	G	W	L	V	H	R	S	W	L	D	R	D	E	K	V	V	V	M	Q	T	V	R	D	Q	I	G	Q	H	V	F	T	A	H	R	L	D	R	P	T	S	G	V	L	L	M	G	L	S	S	E	A	G	R	L	L	A	Q	Q	F	E	Q	H	Q	I
Query Conservation
Alig confidence																																				.	.	.	.	.																																	.	.
Template Conservation																																				.	.	.	.	.																																	.	.
Template Sequence		P	R	E	A	E	D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D	G	E	R	D	N	I	V	D	F	V	.	.	.	.	.	N	H	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	.	.	L	R	A	G	N	D	H
Template Known Secondary structure					G	G	G										T	T		B					S	S		T	T	B						.	.	.	.	.	T		S	S					S	S				T	T									S		T							.	.			G	G	G
Template Predicted Secondary structure																																				.	.	.	.	.																																	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	R	Y	H	A	I	V	R	G	W	L	M	E	E	A	V	L	D	Y	P	L	V	E	E	L	D	K	I	A	D	K	F	A	R	E	D	K	G	P	Q	P	A	V	T	H	Y	R	G	L	A	T	V	E	M	P	V	A	T	G	R	Y	P	T	T	R	Y	G	L	V	E	L	E	P	K	T	G	R	K	H
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	E	Y	L	V	T	V	D	K	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	K	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R
Template Known Secondary structure										S	S												T			B		S	S	S	B										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S				T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																											.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		Q	L	R	R	H	L	A	H	L	R	H	P	I	I	G	D	.	.	S	K	H	G	D
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		Q	I	R	R	M	C	E	H	F	G	Y	E	V	K	K	L	E	R	T	R	I	M	N
Template Known Secondary structure										T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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