Job Description P0AA41 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 6 Aligned Residues 151 % Identity 21% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	I	L	Y	Q	D	E	W	L	V	A	V	N	K	P	S	G	W	L	V	H	R	S	W	L	D	R	D	E	K	V	V	V	M	Q	T	V	R	D	Q	I	G	Q	H	V	F	T	A	H	R	L	D	R	P	T	S	G	V	L	L	M	G	L	S	S	E	A	G	R	L	L	A	Q	Q	F	E	Q	H	Q
Query Conservation
Alig confidence																													.	.	.	.	.																																									.	.
Template Conservation																													.	.	.	.	.																																									.	.
Template Sequence		L	L	T	W	I	E	E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S	N	D	D	Y	P	.	.	.	.	.	T	I	Y	Q	F	F	D	Y	P	L	A	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V	L	L	T	D	D	G	Q	W	S	H	R	I	.	.	T	S	P	K	H	H
Template Known Secondary structure					S	S												T	T		B	S	S						.	.	.	.	.	B	G	G	G	G	S		T	T	G	G	G	G				S	S				T	T									S									.	.			T	T	S
Template Predicted Secondary structure																													.	.	.	.	.																																									.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	K	R	Y	H	A	I	V	R	G	W	L	M	E	E	A	V	L	D	Y	P	L	V	E	E	L	D	K	I	A	D	K	F	A	R	E	D	K	G	P	Q	P	A	V	T	H	Y	R	G	L	A	T	V	E	M	P	V	A	T	G	R	Y	P	T	T	R	Y	G	L	V	E	L	E	P	K	T	G	R	K
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	E	K	T	Y	L	V	T	L	A	D	P	V	E	E	N	Y	S	A	A	C	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	I	L	L	R	G	E	K	E	P	T	K	P	A	K	L	E	I	L	.	.	.	.	.	.	.	.	.	.	.	.	D	D	Y	N	V	N	L	T	I	S	E	G	R	Y
Template Known Secondary structure											S	S				T	T									.	.	.	.	.	.	.	.	.	.	.	.				T	T		S	S											.	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S				T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.													.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.													170	.	.	.	.	.	.	.	.	.	180	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		H	Q	L	R	R	H	L	A	H	L	R	H	P	I	I	G	D	S	.	.	K	H	G	D
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L	H	R	W	K	I	G	D
Template Known Secondary structure		T									T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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