Job Description P0AA41 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 3 Aligned Residues 223 % Identity 27% Template c1qyuA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		L	E	I	L	Y	Q	D	E	W	L	V	A	V	N	K	P	S	G	W	L	V	H	R	S	W	L	D	R	D	E	K	V	V	V	M	Q	T	V	R	D	Q	.	.	.	I	G	Q	H	V	F	T	A	H	R	L	D	R	P	T	S	G	V	L	L	M	G	L	S	S	E	A	G	R	L	L	A	Q	Q	F	E
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	X	V	V	A	K	T	V	P	A	Q	T	R	L	V	E	S	L	Q
Template Known Secondary structure									S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B		S				T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	Q	I	Q	K	R	Y	H	A	I	V	R	G	W	L	M	E	E	A	V	L	D	Y	P	L	V	E	E	L	D	K	I	A	D	K	F	A	R	E	D	K	G	P	Q	P	A	V	T	H	Y	R	G	L	A	T	V	E	M	P	V	A	T	G	R	Y	P	T	T	R	Y	G	L	V	E	L	E	P	K	T
Query Conservation
Alig confidence																																				.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	X	T	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	.	.	H	X	A	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	X	E	H	.	.	.	.	.	.	.	.	.	.	.	F	R	V	H	T	R	L	R	L	R	L	E	T
Template Known Secondary structure		T	T												S																S	S		T	T	.	.						T	T	S	B												.	.	.	.	.	.	.	.	.	.	.		S	S									S
Template Predicted Secondary structure																																				.	.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.												.	.	220	.	.	.	.	.	.	.	.	.	230
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		G	R	K	H	Q	L	R	R	H	L	A	H	L	R	H	P	I	I	G	D	S	K	H	G	D	L	R	Q	.	.	.	.	.	.	N	R	S	G	A	E	H	F	G	L	Q	R	L	M	L	H	A	S	Q	L	S	L	T	H	P	F	T	G	E	P	L	T	I	H	A	G	L	D	D	T	W	M	Q	A	L	S
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	T	H	Q	I	R	V	H	X	A	H	I	T	H	P	L	V	G	D	P	V	Y	G	G	R	P	R	P	P	K	G	A	S	E	A	F	I	S	T	L	R	K	F	D	R	Q	A	L	H	A	T	X	L	R	L	Y	H	P	I	S	G	I	E	X	E	W	H	A	P	I	P	Q	D	X	V	E	L	I	E
Template Known Secondary structure				T	T									T	T			B	T	T		T	T	T	T							T	T														S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		233	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	G	W	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	X	R	A	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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