Job Description P0AA41 Confidence 100.00% Date Thu Jan 5 11:11:52 GMT 2012 Rank 7 Aligned Residues 151 % Identity 19% Template c1kskA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	Y	Q	D	E	W	L	V	A	V	N	K	P	S	G	W	L	V	H	R	S	W	L	D	R	D	E	K	V	V	V	M	Q	T	V	R	D	Q	I	G	Q	H	V	F	T	A	H	R	L	D	R	P	T	S	G	V	L	L	M	G	L	S	S	E	A	G	R	L	L	A	Q	Q	F	E	Q	H	Q	I	Q
Query Conservation
Alig confidence																																.	.	.																																						.	.
Template Conservation																																.	.	.																																						.	.
Template Sequence		A	Q	Q	H	G	P	R	Y	F	X	L	N	K	P	Q	G	Y	V	C	S	T	D	D	P	D	H	P	T	V	L	.	.	.	Y	F	L	D	E	P	V	A	W	K	L	H	A	A	G	R	L	D	I	D	T	T	G	L	V	L	X	T	D	D	G	Q	W	S	H	R	I	.	.	T	S	P	R	H	H	C	E
Template Known Secondary structure																T	T		B	S	S	S	S		S	S	S		B	G	G	.	.	.	G	G				T	T	G	G	G				S	S				T	T									S									.	.			T	T	S
Template Predicted Secondary structure																																.	.	.																																						.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	Y	H	A	I	V	R	G	W	L	M	E	E	A	V	L	D	Y	P	L	V	E	E	L	D	K	I	A	D	K	F	A	R	E	D	K	G	P	Q	P	A	V	T	H	Y	R	G	L	A	T	V	E	M	P	V	A	T	G	R	Y	P	T	T	R	Y	G	L	V	E	L	E	P	K	T	G	R	K	H	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	T	Y	L	V	T	L	E	S	P	V	A	D	D	T	A	E	Q	F	A	K	.	.	.	.	.	.	.	.	.	.	.	.	G	V	Q	L	H	N	E	K	D	L	T	K	P	A	V	L	E	V	I	.	.	.	.	.	.	.	.	.	.	.	.	T	P	T	Q	V	R	L	T	I	S	E	G	R	Y	H	Q
Template Known Secondary structure									S	S				T	T								.	.	.	.	.	.	.	.	.	.	.	.					T	T		S	S											.	.	.	.	.	.	.	.	.	.	.	.		T	T							S				T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.													170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		L	R	R	H	L	A	H	L	R	H	P	I	I	G	D	S	K	.	.	H	G	D
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		V	K	R	X	F	A	A	V	G	N	H	V	V	E	L	H	R	E	R	I	G	G
Template Known Secondary structure									T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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