Job Description P0AF43 Confidence 16.82% Date Thu Jan 5 11:25:06 GMT 2012 Rank 96 Aligned Residues 160 % Identity 12% Template c3l8jA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:programmed cell death protein 10; PDBTitle: crystal structure of ccm3, a cerebral cavernous malformation protein2 critical for vascular integrity Resolution 3.05 Å

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		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	A	M	E	Q	M	M	E	G	L	N	K	V	M	H	G	E	P	R	Q	E	K	E	L	R	K	L	A	D	D	I	N	V	L	Y	T	A	I	K	L	Y	L	A	R	M	P	K	E	E	L	A	E	E	E	S	R	R	W	A	E	I	I	E	M	S	L	N	L	E	Q	A	S	D	I	V	E	R	M	G
Query Conservation
Alig confidence																																																									.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		L	S	A	A	Q	T	L	R	A	A	F	I	K	A	E	K	E	N	P	G	L	T	Q	D	I	I	M	K	I	L	E	K	K	S	V	E	V	N	F	T	E	S	L	L	R	M	A	A	D	D	V	E	E	Y	M	.	.	.	.	.	.	I	E	R	P	E	P	E	F	Q	D	L	N	E	K	A	R	A	L	K
Template Known Secondary structure																			S	T	T												T															T	T	S			G	G	G		.	.	.	.	.	.			S		S
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	I	A	D	K	S	L	A	A	R	R	A	F	S	L	D	G	L	K	E	L	D	A	L	Y	E	Q	L	L	S	N	L	K	L	A	M	S	V	F	F	S	G	D	V	T	S	A	R	R	L	R	R	S	K	H	R	F	R	I	L	N	R	R	Y	S	H	A	H	V	D	R	L	H	Q	Q	N	V	Q	S
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		Q	I	L	S	K	I	P	D	E	I	N	D	R	.	.	V	R	F	L	Q	T	I	K	D	I	A	S	A	I	K	E	L	L	D	T	V	N	N	V	F	K	K	Y	Q	Y	Q	N	R	R	A	L	E	H	Q	K	K	E	F	V	K	Y	S	K	S	F	S	D	T	L	K	T	Y	F	K	D	G	K	A	I	N
Template Known Secondary structure						T	G	G	G	T	S	S	S		.	.																											S	S				S
Template Predicted Secondary structure															.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		503	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	T	S	S	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	V	S	A	N	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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