Job Description P0AF43 Confidence 18.68% Date Thu Jan 5 11:25:06 GMT 2012 Rank 64 Aligned Residues 170 % Identity 14% Template c3axjB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:translin associated factor x, isoform b; PDBTitle: high resolution crystal structure of c3po Resolution 2.10 Å

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		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																													.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	Q	M	M	E	G	L	N	K	V	M	H	G	E	P	R	Q	E	K	E	L	R	K	L	A	D	D	I	N	V	L	Y	T	A	I	K	L	Y	L	A	R	M	.	P	K	E	E	L	A	E	E	E	S	R	R	W	A	E	I	I	E	M	S	L	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	Q	Q	F	R	I	Y	S	N	E	L	I	X	K	H	D	R	H	E	R	I	V	K	L	S	R	D	I	T	I	E	S	K	R	I	I	F	L	L	H	S	I	D	S	R	K	Q	N	K	E	K	V	L	E	E	A	R	Q	R	L	N	K	L	I	A	V	N	F	R	A	V	A	L	E	L	R	D	Q	D
Template Known Secondary structure																																										T	T			S		G	G	G																		T									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
							412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430																																	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	Q	A	S	D	I	V	E	R	M	G	S	E	I	A	D	K	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	R	R	A	F	S	L	D	G	L	K	E	L	D	A	L	Y	E	Q	L	L	S	N
Query Conservation		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	Q	F	R	S	S	Y	S	P	G	L	Q	E	F	I	Q	A	Y	T	Y	X	E	Y	L	C	H	E	D	A	E	G	E	N	E	T	K	S	V	S	D	W	Q	A	I	Q	A	V	X	Q	Y	V	E	E	S	S	P	K	K	F	Q	F	F	V	D	P	T	E	Y	I	L	G	L	S	D	L	T	G	E	L
Template Known Secondary structure		T	T	T	T																									T		S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		L	K	L	A	M	S	V	F	F	S	G	D	V	T	S	A	R	R	L	R	R	S	K	H	R	F	R	I	L	N	R	R	Y	S	H	A	H	V	D	R	L	H	Q	Q	N	V	Q	S	I	E	T	S	S	L	H	L	G	L	L	G	D	.	M	Q	R	L	N	S	L	F	C	S	V
Query Conservation																																																															.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	R	R	C	I	N	S	L	G	S	G	D	T	D	T	C	L	D	T	C	K	A	L	Q	H	F	Y	S	G	Y	I	S	L	.	.	.	.	.	.	.	.	.	.	.	N	C	Q	R	A	R	E	L	W	R	K	I	T	T	X	K	Q	S	V	L	K	A	E	N	V	C	Y	N	V
Template Known Secondary structure											T	T																					T		.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.												.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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