Job Description P39163 Confidence 54.87% Date Thu Jan 5 11:58:18 GMT 2012 Rank 10 Aligned Residues 58 % Identity 10% Template d1em9a_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 2.05

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	D	P	R	H	P	E	Y	E	S	D	T	R	A	Q	V	I	A	P	L	I	A	A	A	S	G	P	L	G	T	N	A	Q	Y	L	F	S	L	E	Q	E	L	I	K	L	G	M	Q	D	D	G	L	N	D	L	L	V	S	V
Query Conservation
Alig confidence											.									.
Template Conservation											.									.
Template Sequence		V	I	K	T	E	G	P	A	W	.	T	P	L	E	P	K	L	I	.	T	R	L	A	D	T	V	R	T	K	G	L	R	S	P	I	T	M	A	E	V	E	A	L	M	S	S	P	L	L	P	H	D	V	T	N	L	M	R	V	I
Template Known Secondary structure					S	S	S				.									.												T	T												T	S	S
Template Predicted Secondary structure											.									.
Template SS confidence
		3	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions