Job Description P39163 Confidence 21.52% Date Thu Jan 5 11:58:18 GMT 2012 Rank 25 Aligned Residues 59 % Identity 8% Template c2v4xA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain Resolution 1.5 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	D	P	R	H	P	E	Y	E	S	D	T	R	A	Q	V	I	A	P	L	I	A	A	A	S	G	P	L	G	T	N	A	Q	Y	L	F	S	L	E	Q	E	L	I	K	L	G	M	Q	D	D	G	L	N	D	L	L	V	S	V
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		V	F	E	N	N	N	Q	R	Y	Y	E	S	L	P	F	K	Q	L	.	K	E	L	K	I	A	C	S	Q	Y	G	P	T	A	P	F	T	I	A	X	I	E	N	L	G	T	Q	A	L	P	P	N	D	W	K	Q	T	A	R	A	C
Template Known Secondary structure						S	S													.										T		T	T	S												T	S
Template Predicted Secondary structure																				.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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