Job Description P39163 Confidence 99.74% Date Thu Jan 5 11:58:18 GMT 2012 Rank 2 Aligned Residues 142 % Identity 24% Template c2qikA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0131 protein ykqa; PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast2 structural genomics target sr631 Resolution 1.35 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																		.	.	.	.	.	.	.											.																																.	.
Query SS confidence																		.	.	.	.	.	.	.											.																																.	.
Query Sequence		P	D	E	G	P	V	W	I	F	G	Y	G	S	L	M	W	.	.	.	.	.	.	.	N	P	A	L	E	F	T	E	S	C	.	T	G	T	L	V	G	W	H	R	A	F	C	L	R	L	T	A	G	R	G	T	A	H	Q	P	G	R	M	L	A	L	.	.	K	E	G	G	R	T	T	G	V	A	Y	R	L
Query Conservation																		.	.	.	.	.	.	.											.																																.	.
Alig confidence																		.	.	.	.	.	.	.											.																.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		K	S	K	N	P	I	Y	Y	F	A	Y	G	S	C	X	D	N	A	R	F	Q	K	A	G	V	D	H	Y	F	Q	D	P	V	G	R	A	V	L	K	G	Y	T	T	R	F	T	L	K	R	.	.	.	.	.	.	.	.	.	E	D	G	S	R	A	D	X	L	E	D	G	G	T	T	E	G	V	L	Y	R	I
Template Known Secondary structure		T	T		S	S							S	G	G	G	S	S							T		G	G	G	S	S										T										.	.	.	.	.	.	.	.	.	T	T									S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.										.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		P	E	E	T	L	E	Q	E	L	T	L	L	W	K	R	E	M	I	T	G	C	.	Y	L	P	T	W	C	Q	L	D	L	D	D	G	R	T	V	N	A	I	V	F	I	M	D	P	R	H	P	E	Y	E	S	D	T	R	A	Q	V	I	A	P	L	I	A	A	A	S	G	P	L	G	T	N	A	Q	Y	L	F
Query Conservation																							.
Alig confidence						.	.	.	.														.																													.	.	.																	.
Template Conservation						.	.	.	.																																											.	.	.																	.
Template Sequence		P	Y	S	A	.	.	.	.	L	S	Y	L	Y	K	R	E	G	V	E	S	L	T	Y	R	P	A	F	V	D	V	E	A	G	G	R	H	Y	K	D	C	L	T	F	L	V	L	Q	K	E	A	.	.	.	E	I	A	P	P	Q	H	Y	Q	I	E	I	E	R	G	A	.	E	L	Y	L	S	P	E	F	T	E
Template Known Secondary structure			G	G	G	.	.	.	.								T	T	T	T	T	T	S											T	T												S	S				.	.	.																	.				S
Template Predicted Secondary structure						.	.	.	.																																											.	.	.																	.
Template SS confidence
		195	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	E	Q	E	L	I	K	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	K	R	H	X	N	S	L	P
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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