Job Description Q46800 Confidence 100.00% Date Thu Jan 5 12:34:23 GMT 2012 Rank 2 Aligned Residues 285 % Identity 30% Template c3hrdC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		M	F	D	F	A	S	Y	H	R	A	A	T	L	A	D	A	I	N	L	L	A	D	N	P	Q	A	.	.	K	L	L	A	G	G	T	D	V	L	I	Q	L	H	H	H	N	D	R	Y	R	H	I	V	D	I	H	N	L	A	E	L	R	G	I	T	L	A	E	D	G	S	L	R	I	G	S	A	T	T	F	T
Query Conservation																												.	.
Alig confidence						.																						.	.																																									.
Template Conservation						.																																																																.
Template Sequence		M	K	D	F	.	E	F	F	A	P	K	T	L	E	E	A	K	G	L	L	H	Q	Y	K	D	V	P	P	A	I	I	A	G	G	T	D	L	V	I	E	I	N	D	R	W	E	K	P	D	V	V	I	D	I	K	K	L	K	E	L	E	Y	I	R	V	E	E	N	.	T	I	H	I	G	A	L	S	T	F	T
Template Known Secondary structure						.						S	S											T	T	T	S						S	S		T	T							T	T	S				S						T	T		G	G	G							S	S	.						T	T		B
Template Predicted Secondary structure						.																																																																.
Template SS confidence
		1	.	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		Q	L	I	E	D	P	I	T	Q	R	H	L	P	A	L	C	A	A	A	T	S	I	A	G	P	Q	I	R	N	V	A	T	Y	G	G	N	I	C	N	G	A	T	S	A	D	S	A	T	P	T	L	I	Y	D	A	K	L	E	I	H	S	P	R	G	V	R	F	V	P	I	N	G	F	H	T	G	P	G	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		Q	I	E	N	H	P	F	I	R	S	H	V	R	A	L	Y	K	A	A	S	Q	V	G	S	P	Q	I	R	N	L	G	T	I	G	G	N	L	S	T	S	S	V	A	G	D	G	V	S	A	M	T	T	L	D	A	T	V	V	L	E	S	V	R	G	T	R	Q	M	K	L	T	D	F	F	D	G	E	G	F	K
Template Known Secondary structure																						T	S	S									B								T		T	T										T	T								T	T															S	S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
			157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.																																																				.
Query SS confidence		.																																																				.
Query Sequence		.	K	V	S	L	E	H	D	E	I	L	V	A	F	H	F	P	P	Q	P	K	E	H	A	G	S	A	H	F	K	Y	A	M	R	D	A	M	D	I	S	T	I	G	C	A	A	H	C	R	L	D	N	.	G	N	F	S	E	L	R	L	A	F	G	V	A	A	P	T	P	I	R	C	Q	H	A	E	Q	T	A
Query Conservation		.																																																				.
Alig confidence		.																	.																																			.
Template Conservation																			.
Template Sequence		R	R	N	A	L	E	A	D	E	I	M	T	E	V	I	I	D	.	R	P	D	A	H	S	A	S	A	F	Y	K	L	A	K	R	K	S	L	A	I	S	V	I	G	G	G	M	A	V	K	V	D	D	A	G	V	C	T	W	A	S	M	R	G	G	C	I	G	R	Y	P	L	H	F	K	Q	A	E	E	M	L
Template Known Secondary structure		S	S	S	S			T	T										.				T	T										S	S	S	S	S				S											T	T	T											T	S	S	S	S
Template Predicted Secondary structure																			.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	A	P	L	N	L	Q	T	L	E	A	I	S	E	S	V	L	Q	D	V	A	P	R	S	S	W	R	A	S	K	E	F	R	L	H	L	I	Q	T	M	T	K	K	V	I	S	E	A	V	A	A	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	A	P	L	T	M	E	T	M	E	A	T	L	P	I	L	H	D	T	V	Y	D	M	A	R	A	R	P	S	V	L	Y	K	K	E	S	V	Q	G	V	F	K	K	L	F	V	D	I	L	D	Q	L	E
Template Known Secondary structure		T	T	S	B								T	T												T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions