Job Description P0ADR6 Confidence 97.28% Date Thu Jan 5 11:21:40 GMT 2012 Rank 124 Aligned Residues 248 % Identity 12% Template c3k0bA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 Resolution 1.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	L	L	C	R	P	G	F	E	K	E	C	A	A	E	I	T	D	K	A	G	Q	R	E	I	F	G	F	A	R	V	K	E	N	A	G	Y	V	I	Y	E	C	Y	Q	P	D	D	G	D	K	L	I	R	E	L	P	F	S	S	L	I	F	A	R	Q	W	F	V	V	G	E	L	L	Q	H	L	P	P
Query Conservation
Alig confidence																						.	.	.	.	.	.	.					.													.												.	.	.	.	.																.
Template Conservation																						.	.	.	.	.	.	.					.													.												.	.	.	.	.																.
Template Sequence		Q	L	V	A	T	A	A	S	G	L	E	A	I	V	G	K	E	V	A	R	.	.	.	.	.	.	.	L	G	Y	D	.	P	K	V	E	N	G	K	V	Y	F	E	G	.	D	L	S	A	I	A	R	A	N	L	W	.	.	.	.	.	L	R	V	A	D	R	V	K	I	V	V	G	V	F	K	.	A	T	T
Template Known Secondary structure									T	T												.	.	.	.	.	.	.	T	T			.					T	T							.												.	.	.	.	.		S	S		S											.		S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.					.													.												.	.	.	.	.																.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.
		83	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																												.																															.
Query SS confidence													.	.																												.																															.
Query Sequence		E	D	R	I	T	P	I	V	G	M	L	.	.	Q	G	V	V	E	K	G	G	E	L	R	V	E	V	A	D	T	N	E	S	K	E	L	L	K	F	C	.	R	K	F	T	V	P	L	R	A	A	L	R	D	A	G	V	L	A	N	Y	E	T	P	K	R	P	V	V	H	V	.	F	F	I	A	P	G	C	C
Query Conservation													.	.																												.																															.
Alig confidence													.	.																												.																															.
Template Conservation
Template Sequence		F	D	E	L	F	E	K	T	K	A	L	P	W	E	D	Y	L	P	L	D	A	Q	F	P	V	A	G	K	S	V	K	S	T	L	Y	S	V	P	D	C	Q	A	I	V	K	K	A	I	V	N	R	V	S	E	K	Y	R	R	S	G	R	L	X	E	T	G	A	L	F	K	L	E	V	S	I	L	K	D	E	V
Template Known Secondary structure											T	S		G	G	G	T			T	T		B									S	S	S																							T	T	T		T	T			S		S	S	B									T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		Y	T	G	Y	S	Y	S	N	N	N	S	P	F	Y	M	G	I	P	R	L	K	F	P	A	D	A	P	S	R	S	T	L	K	L	E	E	A	F	H	V	F	I	P	A	D	E	W	D	E	R	L	A	N	G	M	W	A	V	D	L	G	A	C	P	G	G	W	T	Y	Q	L	V	K	R	N	M	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence										.											.	.																		.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation										.											.	.																		.	.	.	.	.	.	.	.	.
Template Sequence		T	L	T	I	D	T	S	G	.	A	G	L	H	K	R	G	Y	R	L	.	.	A	Q	G	S	A	P	I	K	E	T	X	A	A	A	L	V	L	.	.	.	.	.	.	.	.	.	L	T	S	W	H	P	D	R	P	F	Y	D	P	V	C	G	S	G	T	I	P	I	E	A	A	L	I	G	Q	N	I	A	P
Template Known Secondary structure							S	S	S	.	S		T	T			S	T	T	T	.	.	T	S		S		S												.	.	.	.	.	.	.	.	.		S				T	T	S					T	T		T	T	S											T	T			T
Template Predicted Secondary structure										.											.	.																		.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
																																						235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	V	Y	S	V	D	N	G	P	M	A	Q	S	L	M	D	.	.	.	.	.	.	.	.	T	G	Q	V	T	W	L	R	E	D	G	F	K	F	R	P	T	R	S	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																		.
Template Conservation																																																																															.
Template Sequence		G	F	N	R	E	F	V	S	E	T	W	D	W	X	P	K	Q	V	W	A	D	A	R	Q	E	A	E	D	L	A	N	Y	D	Q	P	L	N	I	I	G	G	D	I	D	A	R	L	I	E	I	A	K	Q	N	A	V	E	A	G	L	G	D	L	I	T	F	R	Q	L	Q	V	A	D	F	Q	T	E	.	D	E
Template Known Secondary structure		T	T	T	S			G	G	G	G		T	T	S																		T	T										S															T	T		T	T		S							G	G	G					.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.
		271	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	W	M	V	C	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	G	V	V	V	A	N	P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions