 |
Job Description | P0ADR6 | Confidence | 94.90% | Date | Thu Jan 5 11:21:40 GMT 2012 |
Rank | 239 | Aligned Residues | 78 |
% Identity | 5% | Template | c3fzgA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:16s rrna methylase; |
PDBTitle: structure of the 16s rrna methylase arma
|
Resolution | 2.00 Å |
|
 |
  |   |
192 | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | |
|
. | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 260 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | E | A | F | H | V | F | I | P | A | D | E | W | D | E | R | L | A | N | G | M | W | A | V | D | L | G | A | C | P | G | G | W | T | Y | Q | L | V | K | R | . |
. |
N | M | W | V | Y | S | V | D | N | G | P | M | A | Q | S | L | M | D | . |
. |
. |
. |
. |
. |
T | G | Q | V | T | W | L | R | E | D | G | F | K |
Query Conservation |   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   | . | . |
|   |   |
|   |
|
|
|   |
|   |
|   |   |   |
|   |   | . | . | . | . | . | . |   |   |   |
|   |
|   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |
|   |
|
|
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
L | N | D | F | Y | T | Y | V | . |
. |
. |
. |
. |
. |
F | G | N | I | K | H | V | S | S | I | L | D | F | G | C | G | F | N | P | L | A | L | Y | Q | W | N | E | N | E | K | I | I | Y | H | A | Y | D | I | D | R | A | E | I | A | F | L | S | S | I | I | G | K | L | K | T | T | I | K | Y | R | F | L | N | K | E | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  | S |
|
|
| S |  |  |  |  |  | T |
| T | T |  |  |  |  |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
| S | S |  |  |  |  |  |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . |
  |
  |   |
264 | . | . | . | . | . | 270 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | R | P | T | R | S | N | I | S | W | M | V | C |
Query Conservation |   |
  |   |
|   |   |   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   | . |   |   |   |
|   |
|
|   |
Template Sequence |   |
D | V | Y | K | . |
G | T | Y | D | V | V | F | L |
Template Known Secondary structure |   |
 |  | T | T | . | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
| . |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
167 | . | . | 170 | |
. | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|