 |
Job Description | P0A6F1 | Confidence | 54.89% | Date | Thu Jan 5 11:02:59 GMT 2012 |
Rank | 216 | Aligned Residues | 70 |
% Identity | 10% | Template | c3moiA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:probable dehydrogenase; |
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
|
Resolution | 2.50 Å |
|
 |
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | |
|
. | . | . | . | . | . | . | . | 210 | . | . | |
. | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
220 | . | . | . | . | . | . | . | . | . | 230 | . | |
. | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | F | H | V | V | A | Y | D | F | G | A | . |
. |
K | R | N | I | L | R | M | L | V | D | R | . |
G | C | R | L | T | I | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | A | Q | T | S | A | E | D | V | L | K | M | . |
N | P | D | G | I | F | L | S | N | G | P | G | D | P | A | P | C | D |
Query Conservation |   |
  |   |   |
|   |
|
|
|   |
|   | . | . |
|   |
|
|   |
|   |
|   |   |   | . |
|   |   |
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
|   |
|   |   |   | . |   |
|
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|   |
|   |
| . | . | . | . |   |
|
|   |   |   |
|
Template Sequence |   |
K | I | R | F | G | I | C | G | L | G | F | A | G | S | V | L | M | A | P | A | M | R | H | H | P | D | A | Q | I | V | A | A | C | D | P | N | E | D | V | R | E | R | F | G | K | E | Y | G | I | P | V | F | A | T | L | A | E | M | M | Q | H | V | Q | M | D | A | V | Y | I | . |
. |
. |
. |
A | S | P | H | Q | F | H |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
|
| S |  |  |  |  | T | T |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  | S | S |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  | . | . | . | . |
| S |
| G | G | G |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
|
. | . | . | . | . | . | . |
  |
  |   |
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | A | I | T | A | I | Q | K | F | L | E | T | D | I | P | V | F |
Query Conservation |   |
  |   |
|   |   |
|
|   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . |   |   |   |   |   |
|
|   |
|
|
|
|
|   |
Template Sequence |   |
C | . |
. |
E | H | V | V | Q | A | S | E | Q | G | L | H | I | I |
Template Known Secondary structure |   |
 | . | . |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | |
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|