Phyre 2 alignment of P0A6F1 with c3k9cA

Job Description P0A6F1
Confidence 32.23% Date Thu Jan 5 11:02:59 GMT 2012

Rank 380 Aligned Residues 59

% Identity 14% Template c3k9cA_

PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species.

Resolution 2.14 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.
Query Sequence	R	N	I	L	R	M	L	V	D	R	G	C	R	L	T	I	V	P	A	Q	T	.	.	.	.	.	.	S	A	E	D	V	L	K	M	N	P	D	G	I	F	L	S	N	G	P	G	D	P	A	P	C	D	Y	A	I	T	A	I	Q	K	F	L	E	T	D	I	P	V	F	G	I	C
Query Conservation																						.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.
Template Sequence	E	Q	I	Y	A	A	A	T	R	R	G	Y	D	V	X	L	S	A	V	A	P	S	R	A	E	K	V	A	V	Q	A	L	X	R	E	R	C	E	A	A	I	L	L	G	T	R	F	D	T	.	.	.	.	.	.	.	.	D	E	L	G	A	L	A	D	R	V	P	A	L	V	V	A
Template Known Secondary structure										T	T									B	T	T	B										T	T	T	T								T						.	.	.	.	.	.	.	.								T	T	S						S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Template SS confidence
	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

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Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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