 |
Job Description | P0A6F1 | Confidence | 33.84% | Date | Thu Jan 5 11:02:59 GMT 2012 |
Rank | 364 | Aligned Residues | 98 |
% Identity | 12% | Template | c2wltA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:l-asparaginase; |
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution
|
Resolution | 1.40 Å |
|
 |
  |   |
149 | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | |
|
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | F | P | G | L | N | G | M | D | L | A | K | E | V | T | T | A | E | A | Y | S | W | T | Q | G | S | W | T | L | T | G | G | L | P | E | A | K | K | E | D | E | L | P | F | H | V | V | A | Y | D | F | . |
. |
G | A | K | R | N | I | L | R | M | L | V | D | R | G | C | R | L | T | I | V | P | A | Q | T | S | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   | . | . |
|   |
|   |
|
|   |
|   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|   |
|   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
T | F | K | A | L | N | S | G | A | I | G | S | V | Y | Y | G | K | T | R | Y | Y | M | Q | P | L | R | K | H | T | T | E | S | E | F | S | L | S | Q | L | K | T | P | L | P | K | V | D | I | I | Y | T | H | A | G | M | T | P | D | L | F | Q | A | S | L | N | S | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|  |  |
| T | T | T |
|
| S |  |  |  |  | T | T |  |  |  |  |
|
|
|
|
| S |
|
| G | G | G |
| S |
|
| G | G | G |
|
| S | S |
|
|
|  |  |  |  |  |
|
| T | T |
|
| T |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | L | K | M | N | P | D | G | I | F | L | S | N | G | P | G | D | P | A | P | C | D | Y | A | I | T | A | I | Q | K | F | L | E | T | D | I | P | V | F |
Query Conservation |   |
  |
|   |   |   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
. | . | . | . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . |   |   |
|
|
|
| . |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
A | K | G | V | V | I | . |
A | G | V | G | N | G | N | V | S | A | G | F | L | K | A | M | Q | E | A | S | Q | M | G | V | V | I | V |
Template Known Secondary structure |   |
. | . | . | . | . | . |
| S |  |  |  |  | . |  |  | B | T | T | T | B |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . |
|
|  |  |  |  | . |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
243 | . | . | . | . | . | |
. | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|