Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6F1
Confidence99.97%DateThu Jan 5 11:02:59 GMT 2012
Rank21Aligned Residues278
% Identity23%Templatec2ad5B_
PDB info PDB header:ligaseChain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110...... ...120.........130.........140......
Predicted Secondary structure 


























.







Query SS confidence 
















































.





























Query Sequence  ADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTR. KLTRLLREKGAQNGCIIAGDNPDAALALEK
Query Conservation   
 

      
 

       
      

   
    



 




.


  

  
     
              
Alig confidence 
















































.





























Template Conservation    
   
  

    
    
      


 
  
    

   
   

 

  
        
     
         
Template Sequence  KELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSE
Template Known Secondary structure  TTT


SSS


T

GGG

S
GGGTTT







Template Predicted Secondary structure 






























Template SS confidence 















































































   196...200.........210.........220.........230.........240.........250.........260.........270.....
 
   147..150.........160.........170.........180.........190.........200 .........210 .....
Predicted Secondary structure 



































.......

....


Query SS confidence 





















































. . . . . . .









. . . .




Query Sequence  ARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFG. . . . . . . AKRNILRMLV. . . . DRGCR
Query Conservation             

  

                              
 


 
....... 
 

 
 
 ....  
  
Alig confidence 



........









.........................






.......









....




Template Conservation 
   ........          .........................
 






    


 

 


 

       
Template Sequence  WEQV. . . . . . . . IFEEANPVSE. . . . . . . . . . . . . . . . . . . . . . . . . VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVS
Template Known Secondary structure  ........

S.........................S
TTSGGGGTT
Template Predicted Secondary structure  ........



.........................









Template SS confidence 















































































   276... 280......... 290.........300.........310.........320..
 
   216...220.........230. ........240.........250.........260.........270.........280.........290.
Predicted Secondary structure 





....




















Query SS confidence 















. . . .



























































Query Sequence  LTIVPAQTSAEDVLKM. . . . NPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHH
Query Conservation 
 


     
 
   .... 






 




      
  

  
   








 



 
 

 
 

  

 
Alig confidence 















....












.













































Template Conservation 
 
 




 

    
 
   









 .




 
 


 



 












 

 



 

 

 
Template Sequence  VNIKLIDSQDVETRGVEILKGLDAILVPGGFGY. RGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANS
Template Known Secondary structure 
GGGGTT
S




S.TTTT

TTT

TT

B
Template Predicted Secondary structure 
















.
















Template SS confidence 















































































   323......330.........340.........350..... ....360.........370.........380.........390.........400.
 
   292.... ...300.........310.........320.. .......
Predicted Secondary structure 

......................................







....

Query SS confidence 




. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

























. . . .






Query Sequence  GGNHP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VKDVEKNVVMITAQNHGFAVDEATLP. . . . ANLRVTH
Query Conservation 
 
 
......................................
       
  


 

  
   


....    
 
Alig confidence 




......................................

























....






Template Conservation   
        

             
 




   
 
   
 
  


   
 


 






     

  

 


Template Sequence  TEFVPDCKYPVVALITEWRDENGNVEVTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAG
Template Known Secondary structure  TTT
TT
S

S
TTT


SSS






TT
TSS


GGGT
Template Predicted Secondary structure 















































Template SS confidence 















































































   402.......410.........420.........430.........440.........450.........460.........470.........480.
 
   330.........340........ .350.........360.........370.........
Predicted Secondary structure 







.








Query SS confidence 


















.






























Query Sequence  KSLFDGTLQGIHRTDKPAF. SFQGHPEASPGPHDAAPLFDHFIELIEQYRK
Query Conservation   
  
  



     

 .






 



 
   

  

  
   
 
Alig confidence 


















.






























Template Conservation   
 

 





   











  


  
 


  

 

   

Template Sequence  RSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQK
Template Known Secondary structure  TTTT
TTSSSSS
GGGG

TTT

Template Predicted Secondary structure 




















Template SS confidence 


















































   491........500.........510.........520.........530.........540.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions