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Job DescriptionP42640
Confidence99.94%DateThu Jan 5 12:02:01 GMT 2012
Rank17Aligned Residues269
% Identity22%Templatec3q3qA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   213......220.........230.........240.........250.........260......... 270.........280.........290
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Query Sequence  FQLSVRDTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISGAP. . YTALSVPLSLTADSVLSHDIH
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Template Sequence  AARSIAATPPKLIVAISVDQFSADLFSEYRQYY. . TGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGII
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   31........40.........50.........60... ......70.........80.........90.........100........
 
   291. .......300.........310..... ....320.....
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Query Sequence  NY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDNIINMANQAGFQTFWLSSQSA. . . . . . . FRQNGTAVTS
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Template Sequence  ANNWFDLDAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVVSVAGKDRAAIMMGGATADQVWW
Template Known Secondary structure  SS
TT
SSS

TTB
TTSTT
BTTB

B
STT

S


TT

SS
TT
S
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   109110.........120.........130.........140.........150.........160.........170.........180........
 
   326...330......... 340.
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Query Sequence  IAMRAMETVYVRGF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DE
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Template Sequence  LGGPQGYVSYKGVAPTPLVTQVNQAFAQRLAQPNPGFELPAQCVSKDFPVQAGNRTVGTGRFARDAGDYKGFRISPEQDA
Template Known Secondary structure 
STT

STT



TS
B





GGGGGG


TTS




B
TT
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   189190.........200.........210.........220.........230.........240.........250.........260........
 
   342.......350... ......360.........370.........380.........390.........400.........410.... .
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Query Sequence  LLLPHLSQALQQ. . . . NTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDR. . R
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Template Sequence  MTLAFAAAAIENMQLGKQAQTDIISIGLSATDYVGH. . . . . . . . . . . TFGTEGTESCIQVDRLDTELGAFFDKLDKDGID
Template Known Secondary structure  TTTTSSSS

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SSSTT

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   269270.........280.........290.........300.... .....310.........320.........330.......
 
   416...420........
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Query Sequence  ASVMYFADHGLER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YVVVLTADHGGHDLPERHRMNAMPMEQRVDMALTPKALNATIAEKAGLPGKKVIWSDGPSGDIYYDKGLTAAQRARVETE
Template Known Secondary structure 
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TTTT
TT


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   338.340.........350.........360.........370.........380.........390.........400.........410.......
 
   429430.........440......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DPTKKNVYFHGGREASQQ
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Template Sequence  ALKYLRAHPQVQTVFTKAEIAATPSPSGPPESWSLIQEARASFYPSRSGDLLLLLKPRVMSIPEQAVMGSVATHGSPWDT
Template Known Secondary structure  STTTS



S
GGG

T

TTTS
S
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SS
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SS
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   418.420.........430.........440.........450.........460.........470.........480.........490.......
 
   447..450.........460.........470.........480.........490... ......
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Query Sequence  AYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQ. PQTLEE
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Template Sequence  DRRVPILFWRKG. MQHF. . . . EQPLGVETVDILPSLAALIKLPVPKDQIDGRCL
Template Known Secondary structure  TT.


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S
GGGTT



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   498.500......... 510... ......520.........530.........540......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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