Job Description P42640 Confidence 100.00% Date Thu Jan 5 12:02:01 GMT 2012 Rank 5 Aligned Residues 335 % Identity 11% Template c2w5tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Resolution 1.60 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																					.	.	.	.	.																																									.	.	.
Query SS confidence																					.	.	.	.	.																																									.	.	.
Query Sequence		H	Q	R	L	L	S	I	A	N	T	V	P	Y	F	Q	L	S	V	R	.	.	.	.	.	D	T	G	I	D	T	Y	V	L	I	V	G	E	S	V	R	V	D	N	M	S	L	Y	G	Y	T	R	S	T	T	P	Q	V	E	A	Q	R	K	Q	I	.	.	.	K	L	F	N	Q	A	I	S	G	A	P	Y	T
Query Conservation																					.	.	.	.	.																																									.	.	.
Alig confidence																					.	.	.	.	.																																									.	.	.
Template Conservation
Template Sequence		E	D	D	L	T	K	V	L	N	Y	T	K	Q	R	Q	T	E	P	N	P	E	Y	Y	G	V	A	K	K	K	N	I	I	K	I	H	L	E	S	F	Q	T	F	L	I	N	K	K	V	N	G	K	E	V	T	P	F	L	N	K	L	S	S	G	K	E	Q	F	T	Y	F	P	N	F	F	H	Q	T	G	Q	G
Template Known Secondary structure												T	S	T	T						T	T	T	T	T	T	T	T	T									T	T			G	G	G	T	T				T	T			S	S								T	T		S	S					T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		272	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.											.	.	320	.	.	.	.	.	.	.	.	.			330
Predicted Secondary structure							.	.													.	.	.	.	.	.													.																		.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence							.	.													.	.	.	.	.	.													.																		.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		A	L	S	V	P	.	.	L	S	L	T	A	D	S	V	L	S	H	D	.	.	.	.	.	.	I	H	N	Y	P	D	N	I	I	N	M	A	.	N	Q	A	G	F	Q	T	F	W	L	S	S	Q	S	A	F	R	.	.	.	.	.	.	.	.	.	.	Q	N	G	T	A	V	T	S	I	A	M	R	.	.	A
Query Conservation							.	.													.	.	.	.	.	.													.																		.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence							.	.													.	.	.	.	.	.													.																		.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		K	T	S	D	S	E	F	T	M	D	N	S	L	Y	G	L	P	Q	G	S	A	F	S	L	K	G	D	N	T	Y	Q	S	L	P	A	I	L	D	Q	K	Q	G	Y	K	S	D	V	M	H	G	D	Y	K	T	F	W	N	R	D	Q	V	Y	K	H	F	G	I	D	K	F	Y	D	A	T	Y	Y	D	M	S	D
Template Known Secondary structure		T											S					S	S	S						S	T	T	S																						S	S		T	T	G	G	G									T							G	G	G	S				G
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		M	E	T	V	Y	V	R	G	F	D	E	L	L	L	P	H	L	S	Q	A	L	Q	Q	N	T	Q	Q	K	K	L	I	V	L	H	L	N	G	S	H	E	P	A	C	.	S	A	Y	P	Q	S	S	A	V	F	Q	P	Q	D	D	Q	D	A	C	Y	D	N	S	I	H	Y	T	D	S	L	L	G	Q	V	F	E
Query Conservation																																													.
Alig confidence																										.																			.
Template Conservation																										.
Template Sequence		K	N	V	V	N	L	G	L	K	D	K	I	F	F	K	D	S	A	N	Y	Q	A	K	M	.	K	S	P	F	Y	S	H	L	I	T	L	T	N	H	Y	P	F	T	L	D	E	K	D	A	T	I	E	K	S	N	T	G	D	A	T	V	D	G	Y	I	Q	T	A	R	Y	L	D	E	A	L	E	E	Y	I	N
Template Known Secondary structure		G	G			T	T																	T	S	.		S	S									S	S		T	T					G	G	G			S					S	S
Template Predicted Secondary structure																										.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		410	.	.	.					.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.					.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure						.	.	.	.																							.	.	.	.
Query SS confidence						.	.	.	.																							.	.	.	.
Query Sequence		L	L	K	D	.	.	.	.	R	R	A	S	V	M	Y	F	A	D	H	G	L	E	R	D	P	T	K	K	N	V	.	.	.	.	Y	F	H	G	G	R	E	A	S	Q	Q	A	Y	H	V	P	M	F	I	W	Y	S	P	V	L	G	D	G	V	D	R	T	T	E	N	N	I	F	S	T	A	Y	N	N	Y	L
Query Conservation						.	.	.	.																							.	.	.	.
Alig confidence						.	.	.	.																							.	.	.	.																						.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		D	L	K	K	K	G	L	Y	D	N	S	V	I	M	I	Y	G	D	H	Y	G	I	S	E	N	H	N	N	A	M	E	K	L	L	G	E	K	I	T	P	A	K	F	T	D	L	N	R	T	G	F	W	I	K	I	.	.	.	.	.	P	G	K	S	G	G	I	N	N	E	Y	A	G	Q	V	D	V	M	P	T
Template Known Secondary structure							T		S	T	T	S								S		S	S		G	G	G									T	S										T	T	B								.	.	.	.	.	T	T												G	G	G
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.						.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	A	W	M	G	V	T	K	P	E	Q	P	Q	T	L	E	E	V	I	A	H	Y	K	G	D	S	R	V	V	D	A	N	H	D	V	F	D	Y	V	M	L	R	K	E	F	T	E	D	K	Q	G	N	P	T	P	E	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	H	L	A	G	I	D	T	K	N	Y	L	M	F	G	T	D	L	F	S	K	G	H	N	Q	V	V	P	F	R	N	G	D	F	I	T	K	D	Y	K	Y	V	N	G	K	I	Y	S	N	K	N	N	E	L	I	T	T	Q
Template Known Secondary structure							T				T	T	S			S				T	T	S	T	T								T	T	S					S	S					T	T					T	T	T			B			S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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