Return to main results Retrieve Phyre Job Id

Job DescriptionP42640
Confidence99.95%DateThu Jan 5 12:02:01 GMT 2012
Rank16Aligned Residues255
% Identity17%Templatec2gsoB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
Resolution1.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   222.......230.........240.........250.........260......... 270.........280.........290....
Predicted Secondary structure 
























.














......
Query SS confidence 















































.
























. . . . . .
Query Sequence  IDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISGAP. YTALSVPLSLTADSVLSHDIHNYPD. . . . . .
Query Conservation    





 

         
     

 
  
      
    
   . 
  
    


             ......
Alig confidence 
















.....

























.
























......
Template Conservation 

 

 
  
 

 
 
.....    




 

  
  
    
  
  
 


 




  
   

           
Template Sequence  PHALLLISIDGLRADML. . . . . DRGITPNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNSMRDPTLG
Template Known Secondary structure 

TT

GGGG.....SSSS
SS


SS
S


S

SSSTTT
Template Predicted Secondary structure 





.....

































Template SS confidence 















































































   45....50.........60. ........70.........80.........90.........100.........110.........
 
   295....300.........310.........320.........330.........340.........350.. ..
Predicted Secondary structure  ...................































.
Query SS confidence  . . . . . . . . . . . . . . . . . . .

























































.

Query Sequence  . . . . . . . . . . . . . . . . . . . NIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQ. QN
Query Conservation  ...................

   

  

 
                                
  
       
 .  
Alig confidence  ...................















....





































.

Template Conservation                              
      ....                                    
    
Template Sequence  GFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATW. . . . SWPGSEAAIKGVRPSQWRHYQKGVRLDTRVDAVRGWLATDG
Template Known Secondary structure 
TT
T
GGG

S

TT
S....S
TTTTS
BTTB

SB




TT



G
Template Predicted Secondary structure 




















....


























Template SS confidence 















































































   120.........130.........140.........150.... .....160.........170.........180.........190.....
 
   355....360.........370.........380.........390.........400.........410... ......420........
Predicted Secondary structure 
























....









..
Query SS confidence 


























































. . . .














. .
Query Sequence  TQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKD. . . . RRASVMYFADHGLER. .
Query Conservation     
 
        
 

    
               
   
 
 
  
   
  
  ....  



  



   ..
Alig confidence 


















...........




























....














..
Template Conservation                     ...........                                           
      
Template Sequence  AQRNRLVTLYFEHVDEAGH. . . . . . . . . . . DHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEVA
Template Known Secondary structure  GG

...........
TTST
GGG
S



Template Predicted Secondary structure 













...........




















Template SS confidence 















































































   196...200.........210.... .....220.........230.........240.........250.........260....
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                  
   
 

   
    
Template Sequence  PGHAISVEDIAPPQIATAITDGQVIGFEPLPGQQAAAEASVLGAHDHYDCWRKAELPARWQYGSHPRIPSLVCQMHEGWD
Template Known Secondary structure  TT
S
TTT


BS
TT
STTGGGS
GGG

S
STTS
S
TT
Template Predicted Secondary structure 

































Template SS confidence 















































































   265....270.........280.........290.........300.........310.........320.........330.........340....
 
   429430.........440.........450.........460.........470.........480.........490..... .
Predicted Secondary structure  .........












































...
Query SS confidence  . . . . . . . . .


































































. . .
Query Sequence  . . . . . . . . . DPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQ. . . T
Query Conservation  .........                     

 

                   
  
   

    

       ... 
Alig confidence  .........










.

















.



....



























...
Template Conservation     
      
 
   
 

.    
    




  
 .
  
....     
  


 



 
 

     

   
Template Sequence  ALFPDKLAKRAQRGTRGSHG. YDPALPSMRAVFLAQGPD. LAQG. . . . KTLPGFDNVDVYALMSRLLGIPAAPNDGNPAT
Template Known Secondary structure 
S


S


.S
TTSGGG
B
STT.B
SS....

GGGTT



S
SS
TTT
Template Predicted Secondary structure 














.












.



....














Template SS confidence 















































































   345....350.........360.... .....370.........380.. .... ...390.........400.........410........
 
   497..500..
Predicted Secondary structure 





Query SS confidence 





Query Sequence  LEEVIA
Query Conservation        
Alig confidence 





Template Conservation 


 
 
Template Sequence  LLPALR
Template Known Secondary structure  TGGGB
Template Predicted Secondary structure 
Template SS confidence 





   419420....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions