Job Description P45762 Confidence 100.00% Date Thu Jan 5 12:03:39 GMT 2012 Rank 1 Aligned Residues 276 % Identity 35% Template c3ci0K_ PDB info PDB header:protein transport Chain: K: PDB Molecule:pseudopilin gspk; PDBTitle: the crystal structure of the gspk-gspi-gspj complex from2 enterotoxigenic escherichia coli type 2 secretion system Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	R	Q	V	N	H	H	L	Q	R	Q	Y	D	I	E	L	A	E	K	L	A	L	A	S	L	T	Q	D	V	K	D	N	D	R	Q	T	T	L	Q	Q	Y	W	A	Q	P	Q	Q	L	Q	L	E	D	G	N	T	V	K	W	Q	L	R	D	A	Q	H	C	F	N	L	N	A	L	A	K	I	S	D	D	P
Query Conservation
Alig confidence																																	.																																															.	.
Template Conservation																																	.																																															.	.
Template Sequence		R	T	R	S	Q	Q	E	Y	Q	Q	A	L	W	Y	S	A	S	A	E	S	L	A	L	S	A	L	S	L	S	L	K	.	N	E	K	R	V	H	L	E	Q	P	W	A	S	G	P	R	F	F	P	L	P	Q	G	Q	I	A	V	T	L	R	D	A	Q	A	C	F	N	L	N	A	L	A	Q	P	T	T	.	.
Template Known Secondary structure																																T	.	T		S	S			T	T	S	G	G	G	S								T	T										T	T	S	S			G	G	G	G	G	S				.	.
Template Predicted Secondary structure																																	.																																															.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		L	A	S	P	D	F	P	A	Q	V	F	S	A	L	L	I	N	A	G	I	D	R	G	N	T	D	E	I	V	Q	S	I	A	D	Y	I	D	V	D	D	S	P	R	F	.	H	G	A	E	D	S	F	Y	Q	S	Q	T	P	P	R	H	S	A	N	Q	M	L	F	L	T	G	E	L	R	Q	I	K	G	I	T
Query Conservation																																														.
Alig confidence		.																																												.
Template Conservation		.
Template Sequence		.	A	S	R	P	L	A	V	Q	Q	L	I	A	L	I	S	R	L	D	V	P	A	Y	R	A	E	L	I	A	E	S	L	W	E	F	I	D	E	D	R	S	V	Q	T	R	L	G	R	E	D	S	E	Y	L	A	R	S	V	P	F	Y	A	A	N	Q	P	L	A	D	I	S	E	M	R	V	V	Q	G	M	D
Template Known Secondary structure		.	S	S	S													T	T	T																		S	S	S	S	S			S	S	S									T	S	S	S							S			S	S	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		E	N	I	Y	Q	R	L	I	P	Y	V	C	V	L	P	T	T	E	L	S	I	N	L	N	M	L	T	E	N	D	I	P	L	F	R	A	L	F	L	N	N	I	T	D	A	D	A	R	V	L	L	Q	K	R	P	R	E	G	W	L	T	T	D	A	F	L	Y	W	A	Q	Q	D	F	S	G	V	.	K	P	L
Query Conservation																																																																														.
Alig confidence																																									.	.	.	.	.	.	.																				.	.										.
Template Conservation																																									.	.	.	.	.	.	.																				.	.
Template Sequence		A	G	L	Y	Q	K	L	K	P	L	V	C	A	L	P	M	T	R	Q	Q	I	N	I	N	T	L	D	V	T	Q	S	V	I	L	E	A	L	F	D	.	.	.	.	.	.	.	A	R	A	L	L	Q	Q	R	P	A	K	G	W	E	D	V	D	Q	F	.	.	L	A	Q	P	L	L	A	D	V	D	E	R	T
Template Known Secondary structure									T	T	T					S		S	S					T	T	T			G	G	G	T							T		.	.	.	.	.	.	.							T			T	T			S						.	.		T	S	G	G	G	S	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.																				.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	V	K	R	H	L	F	P	Y	S	R	Y	F	T	L	S	T	E	S	I	S	D	E	Q	S	Q	G	W	Q	S	H	I	F	F	N	R	K	Q	Q	S	A	Q	I	Y	R	R	T	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	Q	L	K	T	V	L	S	V	D	S	N	Y	F	W	L	R	S	D	I	T	V	N	E	I	E	L	T	M	N	S	L	I	V	R	M	G	P	Q	H	F	S	V	L	W	H	Q	T	G	E
Template Known Secondary structure											S			S											T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions