 |
Job Description | P45762 | Confidence | 19.61% | Date | Thu Jan 5 12:03:39 GMT 2012 |
Rank | 32 | Aligned Residues | 71 |
% Identity | 14% | Template | c1kdhA_ |
PDB info |
PDB header:transferase/dna | Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short |
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
|
Resolution | 3.00 Å |
|
 |
  |   |
179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | Q | M | L | F | L | T | G | E | L | R | Q | I | K | G | I | T | E | N | I | Y | Q | R | L | I | P | Y | V | C | V | L | P | T | T | E | L | S | I | N | L | . |
. |
. |
. |
. |
N | M | L | T | E | N | D | I | P | L | F | R | A | L | F | L | N | N | I | T | D | A | D | A | R | V | L | L | Q | K | R | P | R | E | G |
Query Conservation |   |
|   |   |
|   |   |   |   |
|
|   |   |
|   |
|   |
|   |   |   |   |   |   |
|   |
|   |
|
|   |
|
|   |   |   |   |   |
|
|
| . | . | . | . | . |
|
|
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |
|
|   |   |
|   |
|   |
|   | . | . | . | . | . |
|
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
| . | . |   |
|
|
|
|
|
|
|   |   |
|   |   | . | . | . | . |   |
|
Template Sequence |   |
P | F | P | I | T | S | M | K | D | T | E | G | I | P | C | L | G | D | K | V | K | S | I | I | E | G | I | I | E | . |
. |
. |
. |
. |
D | G | E | S | S | E | A | K | A | V | L | N | D | E | R | Y | K | S | F | K | L | F | T | S | V | . |
. |
F | G | V | G | L | K | T | A | E | K | W | F | R | . |
. |
. |
. |
M | G |
Template Known Secondary structure |   |
S | S |
|
|
| S | G | G | G | G | T | T |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  | S | S |
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  | T | S | . | . | T | T |
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
|
. | . | . | . | 260 | . | . | . | . | . | . | . | . | |
|
|
|
. | 270 |
  |
  |   |
254 | . | . | . | . | . | 260 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
W | L | T | T | D | A | F |
Query Conservation |   |
  |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|
Template Sequence |   |
F | R | T | L | S | K | I |
Template Known Secondary structure |   |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
271 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|