Job Description P33927 Confidence 9.13% Date Thu Jan 5 11:52:49 GMT 2012 Rank 30 Aligned Residues 309 % Identity 11% Template d3dtua1 SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.15

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.
Query Sequence		R	L	F	A	W	L	L	F	M	S	V	A	G	A	F	L	V	L	V	N	A	F	V	V	N	D	F	T	V	T	Y	V	A	S	N	S	N	T	Q	L	P	V	W	Y	R	V	A	A	T	W	G	A	H	E	G	S	L	L	L	W	V	L	L	M	S	G	W	.	.	.	.	.	.	.	.	T	F	A	V	A
Query Conservation																																																																					.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.
Template Sequence		P	R	M	N	N	L	S	Y	W	L	Y	V	A	G	T	S	L	A	V	A	S	L	F	A	P	G	G	N	G	Q	L	G	S	G	I	G	W	V	L	Y	P	P	L	.	.	.	S	T	S	E	S	G	Y	S	T	D	L	A	I	F	A	V	H	L	S	G	A	S	S	I	L	G	A	I	N	M	I	T	T	F
Template Known Secondary structure																							T	T	S	B		G	G	G	S	B	S			S	T	T	T	T		T	T		.	.	.					S	S	S
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.									.	160	.	.	.	.	.		.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.								.			.
Query SS confidence																																																	.	.	.	.	.	.	.	.								.			.
Query Sequence		I	F	S	Q	R	I	P	L	D	I	V	A	R	V	L	A	I	M	G	M	V	S	V	G	F	L	L	F	I	L	F	T	S	N	P	F	S	R	T	L	P	N	F	P	I	E	G	.	.	.	.	.	.	.	.	R	D	L	N	P	L	L	.	Q	D	.	P	G	L	I	F	H	P	P	L	L	Y	M	G	Y
Query Conservation																																																	.	.	.	.	.	.	.	.								.			.
Alig confidence																																																	.	.	.	.	.	.	.	.								.			.
Template Conservation
Template Sequence		L	N	M	R	A	P	G	M	T	M	H	K	V	P	L	F	A	W	S	I	F	V	T	A	W	L	I	L	L	A	L	P	V	L	A	G	A	I	T	M	L	L	T	D	R	N	F	G	T	T	F	F	Q	P	S	G	G	G	D	P	V	L	Y	Q	H	I	L	W	F	F	G	H	P	E	V	Y	I	I	V	L
Template Known Secondary structure							T	T			G	G	G	S																																		S				T	T		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	G	F	S	V	A	F	A	F	A	I	A	S	L	L	S	G	R	L	D	S	T	Y	A	R	F	T	R	P	W	T	L	A	A	W	I	F	L	T	L	G	I	V	L	G	S	A	W	A	Y	Y	E	L	G	W	G	G	W	W	F	W	D	P	V	E	N	A	S	F	M	P	W	L	V	G	T	A	L	.	.
Query Conservation																																																																																.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																				.	.
Template Conservation																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		P	A	F	G	I	V	S	H	V	I	A	T	F	A	K	K	P	I	F	G	Y	L	P	.	.	.	.	.	.	.	.	.	M	V	Y	A	M	V	A	I	G	V	L	G	F	V	V	W	A	H	H	M	.	.	.	.	.	.	.	Y	T	A	G	L	S	L	T	Q	Q	S	Y	F	M	M	A	T	M	V	I	A
Template Known Secondary structure																T	S			T	T				.	.	.	.	.	.	.	.	.												T	T	S		G	G	G	G		.	.	.	.	.	.	.	T	T	S	S																T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.								.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
								260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	M	H	S	L	A	V	T	E	Q	R	A	S	F	K	A	W	T	L	L	L	A	I	S	A	F	S	L	C	L	L	G	T	F	L	V	R	S	G	V	L	V	S	V	H	A	F	A	.	.	.	.	.	S	D	P	A	R	G	M	F	I	L	A	F	M	V	L	V	I	G	G	S	L	L
Query Conservation		.	.	.	.	.	.																																																.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																				.	.											.	.	.	.	.
Template Conservation																																											.	.
Template Sequence		V	P	T	G	I	K	I	F	S	W	I	A	T	M	W	G	G	S	I	E	L	K	T	P	M	L	W	A	L	G	F	L	F	L	F	T	V	G	G	V	T	.	.	G	I	V	L	S	Q	A	S	V	D	R	Y	Y	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	M	S	L	G	A	V	F	G	I	F	A
Template Known Secondary structure																T	T	S																									.	.														T	T	B												T	T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.			.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	A	A	R	G	H	K	V	R	S	R	V	N	N	A	L	W	S	R	E	S	L	L	L	A	N	N	V	L	L	V	A	A	M	L	V	V	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	Y	F	W	I	G	K	M	S	G	R	Q	Y	P	E	W	A	G	K	L	H	F	W	M	M	F	V	G	A	N	L	T	F	F	P	Q	H	F	L	G
Template Known Secondary structure												S	B
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions