Job Description P33927 Confidence 12.48% Date Thu Jan 5 11:52:49 GMT 2012 Rank 17 Aligned Residues 293 % Identity 15% Template c3rkoM_ PDB info PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	S	V	A	F	A	F	A	I	A	S	L	L	S	G	R	L	D	S	T	Y	A	R	F	T	R	P	W	T	L	A	A	W	I	F	L	T	L	G	I	V	L	G	S	A	W	A	Y	Y	E	L	G	W	G	G	W	W	F	W	D	P	V	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.
Template Sequence		L	I	L	I	P	F	I	G	G	F	L	C	W	Q	T	E	R	F	G	V	K	V	P	R	W	I	A	L	I	T	M	G	L	T	L	A	L	S	L	Q	L	W	L	Q	G	G	Y	S	L	T	Q	.	.	S	A	G	I	P	Q	W	Q	S	E	F	D	M	P	W	I	P	R	F	G	I	S	I	H	L	A	I
Template Known Secondary structure															T	T	G	G	G		T	T																								S		S	S			S	.	.		S		S	S			S									G	G	G	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
									248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	S	F	M	P	W	L	V	G	T	A	L	M	H	S	L	A	V	T	E	Q	R	A	S	F	K	A	W	T	L	L	L	A	I	S	A	F	S	L	C	L	L	G	T	F	L	V	R	S	G	V	L	V	S	V	H	A	F	A	S	D	P	A	R	G	M	F	I	L	A	F	M	V
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Sequence		D	G	L	S	L	L	M	V	V	L	T	G	L	L	G	V	L	A	V	L	C	S	W	K	E	I	E	K	Y	Q	G	F	F	H	L	N	L	M	W	I	L	G	G	V	I	G	V	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	D	M	.	.	F	L	F	F	F	F	W	E
Template Known Secondary structure																						T	T	T	T			S	S																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		B		.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																		.	.	.	.			.	.	.	140	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.										.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	I	G	G	S	L	L	L	F	A	A	R	G	H	K	V	R	S	R	V	N	N	A	L	W	S	R	E	S	L	L	L	A	N	N	V	L	L	V	A	A	M	L	V	V	L	L	G	T	L	L	P	L	V	H	K	Q	L	G	L	G	S	.	.	.	.	.	.	.	.	.	I	S	I	G	E	P	F	F
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		M	M	L	V	P	M	Y	F	L	I	A	L	W	G	H	K	A	S	D	G	K	T	.	.	.	.	R	I	T	A	A	T	K	F	F	I	Y	T	Q	A	S	G	L	V	M	L	I	A	I	L	A	L	V	F	V	H	Y	N	A	T	G	V	W	T	F	N	Y	E	E	L	L	N	T	P	M	S	S	G	V	E
Template Known Secondary structure																			S	S				.	.	.	.																																T	T	T	S					B											T	T
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.			.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		N	T	M	F	T	W	L	M	V	P	F	A	L	L	L	G	V	G	P	L	V	R	W	.	.	G	R	D	R	P	R	K	I	R	N	L	L	I	I	A	F	I	S	T	L	V	L	S	L	L	L	P	W	L	F	E	S	K	V	V	A	M	T	V	L	G	L	A	M	A	C	W	I	A	V	L	A	I	A	E
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		Y	L	L	M	L	G	F	F	I	A	F	A	V	K	M	P	V	V	P	L	H	G	W	L	P	D	A	H	S	Q	A	P	T	A	G	S	V	D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S	L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y
Template Known Secondary structure																T	T		S	S	T	T	T									S											T														T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	R	I	S	R	G	T	K	T	T	F	S	Y	W	G	M	V	A	A	H	L	G	L	A	V	T	I	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	W	M	A	F	A	Q	T	D	I	K	R	L	I	A	Y	T	S	V	S	H	M	G	F	V	L	I	A	I	Y
Template Known Secondary structure								T		S	B																					T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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