Job Description P33927 Confidence 51.61% Date Thu Jan 5 11:52:49 GMT 2012 Rank 2 Aligned Residues 369 % Identity 12% Template c3mk7K_ PDB info PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	G	L	L	C	L	A	L	G	I	A	L	L	L	S	V	Y	P	L	W	G	V	A	R	G	D	A	R	M	M	A	S	S	R	L	F	A	W	L	L	F	M	S	V	A	G	A	F	L	V	L	V	N	A	F	V	V	N	D	F	T	V	T	Y	V	A	S	N	S	N	T	Q	L	P	V	W	Y	R	V
Query Conservation
Alig confidence																														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	A	V	I	F	A	F	G	G	C	A	L	F	A	T	S	Y	Y	S	V	Q	R	T	C	Q	T	T	.	.	.	L	F	A	P	K	L	A	A	F	T	F	W	G	W	Q	L	V	I	L	L	A	A	I	S	L	P	L	G	F	T	S	S	K	E	Y	A	E	L	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T																			T	S		.	.	.		S	S																						T	T	T	T		B				T	T			B	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	T	W	G	A	H	E	G	S	L	L	L	W	V	L	L	M	S	G	W	T	F	A	V	A	I	F	S	Q	R	I	P	L	D	I	V	A	R	V	L	A	I	M	G	M	V	S	V	G	F	L	L	F	I	L	F	T	S	N	P	F	S	R	T	L	P	N	F	P	I	E	G	R	D	L	N	P	L	L
Query Conservation
Alig confidence		.	.							.	.																																																										.	.
Template Conservation		.	.							.	.																																																										.	.
Template Sequence		.	.	E	W	P	I	D	I	.	.	L	I	T	I	V	W	V	A	Y	A	V	V	F	F	G	T	L	A	K	R	K	V	K	H	I	Y	V	G	N	W	F	F	G	A	F	I	L	T	V	A	I	L	H	V	V	N	N	L	E	I	P	V	T	A	M	K	S	.	.	Y	S	L	Y	A	G	A	T	D	A	M
Template Known Secondary structure		.	.							.	.																			T		S	S	S	S																							T							T	T			.	.			S
Template Predicted Secondary structure		.	.							.	.																																																										.	.
Template SS confidence
				127	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	P	G	L	I	F	H	P	P	L	L	Y	M	G	Y	V	G	F	S	V	A	F	A	F	A	I	A	S	L	L	S	G	R	L	D	S	T	Y	A	R	F	T	R	P	W	T	L	A	A	W	I	F	L	T	L	G	I	V	L	G	S	A	W	A	Y	Y	E	L	G	W	G	G	W	W	F	W	D	P	V
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		V	Q	W	W	Y	G	H	N	A	V	G	F	F	L	T	A	G	F	L	G	I	M	Y	Y	F	V	P	K	Q	A	E	R	P	V	Y	S	Y	R	L	.	.	.	.	.	.	.	.	.	S	I	V	H	F	W	A	L	I	T	V	Y	I	W	A	G	P	H	H	L	.	.	.	.	.	.	.	H	Y	T	A	L
Template Known Secondary structure														T	T	T																T				S					.	.	.	.	.	.	.	.	.															T	G	G	G	S	S	.	.	.	.	.	.	.	T	T	S	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.								260	.	.	.	.
										246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310
Predicted Secondary structure		.	.	.	.	.	.	.	.																									.	.																																					.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																									.	.																																					.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	N	A	S	F	M	P	W	L	V	G	T	A	L	M	H	S	L	A	V	T	E	Q	R	.	.	A	S	F	K	A	W	T	L	L	L	A	I	S	A	F	S	L	C	L	L	G	T	F	L	V	R	S	G	V	L	V	S	V	H	A	F	.	.	.	.	.	A	S	D	P	A
Query Conservation		.	.	.	.	.	.	.	.																									.	.																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																									.	.																										.	.										.	.	.	.	.
Template Conservation																																																													.	.
Template Sequence		P	D	W	A	Q	S	L	G	M	V	M	S	L	I	L	L	A	P	S	W	G	G	M	I	N	G	M	M	T	L	S	G	A	W	H	K	L	R	S	D	P	I	L	R	F	L	V	V	S	L	A	F	Y	G	M	S	T	F	E	.	.	G	P	M	M	A	I	K	T	V	N	A	L	S	H	Y	T	D	W	T
Template Known Secondary structure																T													G	G	G	T	T	G	G	G																									.	.					T	S								T	T	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																														.
Query SS confidence																																		.	.																														.
Query Sequence		R	G	M	F	I	L	A	F	M	V	L	V	I	G	G	S	L	L	L	F	A	A	R	G	H	K	V	R	S	R	V	N	.	.	N	A	L	W	S	R	E	S	L	L	L	A	N	N	V	L	L	V	A	A	M	L	V	V	L	L	G	T	L	.	L	P	L	V	H	K	Q	L	G	L	G	S	I	S	I	G
Query Conservation																																		.	.																														.
Alig confidence																																		.	.																														.
Template Conservation
Template Sequence		I	G	H	V	H	A	G	A	L	G	W	V	A	M	V	S	I	G	A	L	Y	H	L	V	P	K	V	F	G	R	E	Q	M	H	S	I	G	L	I	N	T	H	F	W	L	A	T	I	G	T	V	L	Y	I	A	S	M	W	V	N	G	I	A	Q	G	L	M	W	R	A	I	N	D	D	G	T	L	T	Y	S
Template Known Secondary structure												T																	T	T		S	S		S		S																																			B		T	T	S	S	B	S	S
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.				.	.	.	.	.	410	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		E	P	F	F	N	T	M	F	T	W	L	M	V	P	F	A	L	.	.	.	L	L	G	V	G	P	L	V
Query Conservation																			.	.	.
Alig confidence																			.	.	.
Template Conservation
Template Sequence		F	V	E	S	L	E	A	S	H	P	G	F	V	V	R	M	I	G	G	A	I	F	F	A	G	M	L	V
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450