Job Description P33927 Confidence 6.99% Date Thu Jan 5 11:52:49 GMT 2012 Rank 56 Aligned Residues 338 % Identity 13% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	G	L	L	C	L	A	L	G	I	A	L	L	L	S	V	Y	P	L	W	G	V	A	R	G	D	A	R	M	M	A	S	S	R	L	F	A	W	L	L	F	M	S	V	A	G	A	F	L	V	L	V	N	A	F	V	V	N	D	F	T	V	T	Y	V	A	S	N	S	N	T	Q	L	P	V	W	Y	R	V
Query Conservation
Alig confidence																																.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	L	N	A	I	V	F	T	Q	L	F	A	Q	A	I	M	V	Y	L	P	A	R	E	L	N	M	R	P	N	.	.	.	.	M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	N	E	A	T	V	L	Y	T	F	Y	P	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T																				T					.	.	.	.	T	T																						T	T	S			S		T	T			T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		A	A	T	W	G	A	H	E	G	S	L	L	.	.	.	.	.	.	.	.	L	W	V	L	L	M	S	G	W	T	F	A	V	A	I	F	S	Q	R	I	P	L	D	I	V	A	R	V	L	A	I	M	G	M	V	S	V	G	F	L	L	F	I	L	F	T	S	N	P	F	S	R	T	L	P	N	F	P	I	E
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence		.	.											.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	P	L	K	G	H	W	A	F	Y	L	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I	V	L	D	L	W	R	R	W	K	A	A	N	P	G	K	V	T	P	L	V	T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A	V	L	F	L	L	P	W	S	F	G	L
Template Known Secondary structure		.	.	T	B																																			S	T	T																															T							S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		G	R	D	L	N	P	L	L	Q	D	.	.	P	G	L	I	F	H	P	P	L	L	Y	M	G	Y	V	G	F	S	V	A	F	A	F	A	I	A	S	L	L	S	G	R	L	D	S	T	Y	A	R	F	T	R	P	W	T	L	A	A	W	I	F	L	T	L	G	I	V	L	G	S	A	W	A	Y	Y	E	L	G
Query Conservation												.	.
Alig confidence												.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	E	G	V	D	P	L	V	A	R	T	L	F	W	W	T	G	H	P	I	V	Y	F	W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G	G	R	L	V	S	D	P	M	.	.	.	.	.	.	.	.	.	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A
Template Known Secondary structure			S																T																	T						T	S			S		T	T		.	.	.	.	.	.	.	.	.												S	S	T	T	G	G	G	G		T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.										.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		236		.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.											270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Query SS confidence			.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Query Sequence		W	.	G	G	W	W	F	W	D	P	V	E	N	A	.	.	.	.	.	S	F	M	P	W	L	V	G	T	A	L	M	H	S	L	A	V	T	E	Q	R	.	.	.	.	.	.	.	.	.	.	A	S	F	K	A	W	T	L	L	L	A	I	S	A	F	S	L	C	L	L	G	T	F	L	V	R	S	G	V	L
Query Conservation			.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Alig confidence			.													.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																																								.
Template Sequence		D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A	S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	.	I	P	G	G	A	G	G	I	V
Template Known Secondary structure			S	S	S																T																					T	T			S	S	S						S		T	T															.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.
		300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure								.	.	.	.	.																																								.	.	.
Query SS confidence								.	.	.	.	.																																								.	.	.
Query Sequence		V	S	V	H	A	F	.	.	.	.	.	A	S	D	P	A	R	G	M	F	I	L	A	F	M	V	L	V	I	G	G	S	L	L	L	F	A	A	R	G	H	K	V	R	S	R	V	N	N	A	.	.	.	L	W	S	R	E	S	L	L	L	A	N	N	V	L	L	V	A	A	M	L	V	V	L	L	G	T
Query Conservation								.	.	.	.	.																																								.	.	.
Alig confidence								.	.	.	.	.																																								.	.	.
Template Conservation
Template Sequence		N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M	G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L
Template Known Secondary structure				S	G	G	G					T	T	B	T										T	T	T									T	T	S	S	T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions