|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | E | T | L | I | A | I | S | R | W | L | A | K | Q | H | V | V | T | W | C | V | Q | Q | E | G | E | . |
L | W | C | A | N | A | F | Y | L | F | D | A | Q | K | V | A | F | Y | I | L | T | E | E | K | T | R | H | A | Q | M | S | G | P | Q | A | A | V | A | G | T | V | N | G | Q | P | K | T | V | A | L | I | R | G |
Query Conservation |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   | . |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
Template Conservation |   |
  |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |
|   |   |
|
|   |
|
|
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |
Template Sequence |   |
K | T | X | K | E | K | A | V | E | L | L | Q | K | C | E | V | V | T | L | A | S | V | N | K | E | G | Y | P | R | P | V | P | X | S | K | I | A | A | E | G | I | S | T | I | W | X | S | T | G | A | D | S | L | K | T | I | D | F | L | S | N | P | K | A | G | L | C | F | Q | E | K | G | . |
. |
. |
. |
. |
. |
D | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |
|
|  |  |  | T | T | T |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | |
|
|
|
|
|
. | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | Q | F | K | G | E | I | R | R | L | E | G | E | E | S | D | L | A | R | . |
. |
K | A | Y | N | R | R | F | P | V | A | R | M | L | S | A | . |
P | V | W | E | I | R | L | D | E | I | K | F | T | D | N | T | L | G | F | G | K | K | M |
Query Conservation |   |
|
|   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |   |
|   |   |
|   |
|   |
|   |   |   |   |   | . |   |   |   |   |
|   |
|   |   |
|   |   |   |
|
|   |   |
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | A | L | X | G | E | V | E | V | V | T | D | E | K | L | K | Q | E | L | W | Q | D | W | F | I | E | H | F | P | G | G | P | T | D | P | G | Y | V | L | L | K | F | T | A | N | H | A | T | Y | W | I | E | G | T | F | I | H | K | K | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  | S |
|
| G | G | G | G | G | T |
| T | T |
| T | T |
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . |
  |