|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
|
|
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
Query Sequence |   |
M | E | T | L | I | A | I | S | R | W | L | A | K | Q | H | V | V | T | W | C | V | Q | Q | E | G | E | . |
L | W | C | A | N | A | F | Y | L | F | D | A | Q | K | V | A | F | Y | I | L | T | E | E | K | T | R | H | A | Q | M | S | G | P | Q | A | A | V | A | G | T | V | N | G | Q | P | K | T | V | A | L | . |
. |
. |
Query Conservation |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   | . |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |   | . | . |
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | E | D | K | Q | R | I | E | S | I | I | L | Q | A | D | A | C | F | V | G | I | T | D | L | E | G | N | P | Y | V | V | P | X | N | F | G | Y | E | N | D | T | . |
. |
L | Y | L | H | S | G | P | E | G | G | K | I | E | X | L | Q | R | N | N | N | V | C | I | T | F | S | L | G | H | K | L | V | Y | Q | H | C | S |
Template Known Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |
|
|  |  |  | T | T |  | . | . |  |  |  |  |  |
| S |
| S |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
|
|
|
|
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | |
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
I | R | G | V | Q | F | K | G | E | I | R | R | L | E | G | . |
E | E | S | D | L | A | R | K | A | Y | N | R | R | F | P | . |
. |
. |
. |
. |
. |
. |
V | A | R | M | L | S | A | P | V | W | E | I | R | L | D | E | I |
Query Conservation |   |
. | . | . | . |   |   |
|
|
|   |   |
|   |
|   |   |
|   |   | . |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
| . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|
|   |
|   |
|   |
|   |   |
|   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |
Template Sequence |   |
Y | S | X | R | S | E | S | A | X | C | R | G | K | V | E | F | I | E | D | X | E | E | K | R | H | A | L | D | I | I | X | R | H | Y | T | K | D | Q | F | S | Y | S | D | P | A | V | R | N | V | K | V | W | K | V | P | V | D | Q | X |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|
|
|
|
|  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . |
  |