|   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | I | S | R | W | L | A | K | Q | H | V | V | T | W | C | V | Q | Q | E | G | E | . |
L | W | C | A | N | A | F | Y | L | F | D | A | Q | K | V | A | F | Y | I | L | T | E | E | K | T | R | H | A | Q | M | S | G | P | Q | A | A | V | A | G | T | V | N | G | Q | P | K | T | V | A | L | I | R | G | V | Q | F | K | G |
Query Conservation |   |
  |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   | . |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|
|
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |
|   |   |   |   | . | . | . | . | . | . |
|   |
|   |
|
Template Sequence |   |
D | A | L | A | F | L | S | E | R | H | L | A | X | L | T | T | L | R | A | D | N | S | P | H | V | V | A | V | G | F | T | F | D | P | K | T | H | I | A | R | V | I | T | T | G | G | S | Q | K | A | V | N | A | D | R | S | G | L | A | V | L | S | Q | V | D | G | A | R | W | . |
. |
. |
. |
. |
. |
L | S | L | E | G |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | S | S |
|
|  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |
|
|  |  |  | T | T | T | T |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  | T | T |  |  | . | . | . | . | . | . |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
|
|
. | . | . | . | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | |
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | |
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | R | R | L | E | G | E | E | S | . |
D | L | A | R | K | A | Y | N | R | R | F | P | V | A | R | M | L | S | A | P | . |
V | W | E | I | R | L | D | E | I | K | F | T | D | N |
Query Conservation |   |
  |
|   |   |
|   |   |   |
|   | . |   |   |
|   |   |   |
|   |   |
|   |
|   |
|   |   |   |   |   |   | . |   |   |   |
|   |
|   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |   |   |
Template Sequence |   |
R | A | A | V | N | S | D | I | D | A | V | R | D | A | E | L | R | Y | A | Q | R | Y | R | T | P | R | P | N | P | R | R | V | V | I | E | V | Q | I | E | R | V | L | G | S | A | D |
Template Known Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
  |