 |
| Job Description | P77714 | | Confidence | 98.37% | Date | Thu Jan 5 12:31:58 GMT 2012 |
| Rank | 48 | Aligned Residues | 66 |
| % Identity | 14% | Template | c2fugC_ |
| PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; |
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
|
| Resolution | 3.30 Å |
|
| | |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
. | . | . | 50 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
| Predicted Secondary structure | |
|
|
|
|
|
|
|  | | | |  |
|
|
|
|
|
|
|
|
|
|
|
| | | |
| . | . | . | . |
|
|
| | | |
|
|
|
| . | . | . | . | . |
| | | |
|  | | |
|
|
|
|
|
| | | | |
|
|
|
|
| | | | |
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
H | V | D | E | G | H | P | H | I | I | L | A | E | N | P | D | I | N | E | F | H | K | L | M | K | A | C | P | . |
. |
. |
. |
A | G | L | Y | K | Q | D | D | A | G | . |
. |
. |
. |
. |
N | I | H | F | D | S | A | G | C | L | E | C | G | T | C | R | V | L | C | G | N | T | I | L | E | Q | W | Q | Y |
| Query Conservation | |
| |
| | | | | |
| |
| | | | |
| | |
| | | |
| | | |
|
| . | . | . | . | | |
|
| | | | | |
| . | . | . | . | . | |
| |
| | | | |
|
| |
|
| |
| | | |
|
| | |
|
| | |
| | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| | | | | | | |
| | |
| | |
|
|
| |
| |
| . |
|
|
| |
| |
|
| |
| | | |
| | | | |
|
| | | | |
| | | | | | | | |
| | |
|
| |
|
| |
|
|
|
|
|
|
| | |
| | |
| Template Sequence | |
K | H | H | P | L | S | P | F | V | I | L | D | R | E | R | C | I | H | C | K | R | . |
C | V | R | Y | F | E | E | V | P | G | D | E | V | L | D | F | I | E | R | G | V | H | T | F | I | G | T | M | D | F | G | L | P | S | G | F | S | G | N | I | T | D | I | C | P | V | G | A | L | L | D | L | T | A |
| Template Known Secondary structure | |
|
| | | S | S | S | S | S |
| | |
| S |
|
|
|
|
|
| | . | | | | | | | | T | T |
|
|
|
|
|
|
| B | S |
| G | G | G |
| B |
|
|
| S | S | T | T |
|
| S | S |
|
| T | | | | | |
| S | S | S | S | S | B |
| G | G | G |
| Template Predicted Secondary structure | |
|
|
|
|
|
|
| | | | |
|
|
|
|
| | |
| | | . | | | | | | | | |
|
|
|
| | | | | |
|
|
|
|
|
| | | | |
|
|
|
|
|
|
|
|
|
|
|
| | | | |
|
|
|
|
| | |
|
| | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | |
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
