Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 6 Aligned Residues 414 % Identity 31% Template c3qo8A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																		.
Query SS confidence											.	.	.	.																		.
Query Sequence		M	L	D	P	N	L	L	R	N	.	.	.	.	E	P	D	A	V	A	E	K	L	A	R	R	G	F	K	L	D	.	V	D	K	L	G	A	L	E	E	R	R	K	V	L	Q	V	K	T	E	N	L	Q	A	E	R	N	S	R	S	K	S	I	G	Q	A	K	A	R	G	E	D	I	E	P	L	R	L	E	V
Query Conservation											.	.	.	.																		.
Alig confidence											.	.	.	.																		.																																					.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		M	L	D	I	N	A	F	L	V	E	K	G	G	D	P	E	I	I	K	A	S	Q	K	K	R	G	D	S	V	E	L	V	D	E	I	I	A	E	Y	K	E	W	V	K	L	R	F	D	L	D	E	H	N	K	K	L	N	S	V	Q	K	E	I	G	K	R	F	.	.	.	K	D	A	K	D	L	I	A	E	K
Template Known Secondary structure					G	G	G	G		G	G	G	T														T			S																																					S		.	.	.
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.											130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	L	G	E	E	L	D	A	A	K	A	E	L	D	A	L	Q	A	E	I	R	D	I	A	L	T	I	P	N	L	P	A	D	E	V	P	V	G	K	D	E	N	D	N	V	E	V	S	R	W	G	T	P	.	.	.	.	.	.	.	.	.	.	R	E	F	D	F	E	V	R	D	H	V	T	L	G	E	M
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	L	S	N	E	K	K	E	I	I	E	K	E	A	E	A	D	K	N	L	R	S	K	I	N	Q	V	G	N	I	V	H	E	S	V	V	D	S	Q	D	E	E	N	N	E	L	V	R	T	W	T	P	E	N	Y	K	K	P	E	Q	I	A	A	A	T	G	A	P	A	K	L	S	H	H	E	V	L	L	R
Template Known Secondary structure																													S						T	T	S				S		G	G	G										T	T			S	S	S	S	B		T	T	T			B			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	G	L	D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		L	D	G	Y	D	P	E	R	G	V	R	I	V	G	H	R	G	Y	F	L	R	N	Y	G	V	F	L	N	Q	A	L	I	N	Y	G	L	S	F	L	.	S	S	K	G	Y	V	P	L	Q	A	P	V	M	M	N	K	E	V	M	A	K	T	A	Q	L	S	Q	F	D	E	E	L	Y	K	V	I	D	G	E	D
Template Known Secondary structure		T	T													T	T						T																		.		T	T	T								S								T	T	T	S								T							T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	.	.	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	E	D	S	M	A
Query Conservation																												.	.
Alig confidence			.	.	.	.	.																					.	.
Template Conservation			.	.	.	.	.
Template Sequence		E	.	.	.	.	.	K	Y	L	I	A	T	S	E	Q	P	I	S	A	Y	H	A	G	E	W	F	E	S	P	A	E	Q	L	P	V	R	Y	A	G	Y	S	S	C	F	R	R	E	A	G	S	H	G	K	D	A	W	G	I	F	R	V	H	A	F	E	K	I	E	Q	F	V	L	T	E	P	E	K	S	W	E
Template Known Secondary structure			.	.	.	.	.					S	S	T						T	T	T	T	T				S	S																				T	T			S	T	T		S	S	S	S	S		S													G	G	G
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		240						.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R
Query Conservation
Alig confidence																																																																									.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		E	F	D	R	M	I	G	C	S	E	E	F	Y	Q	S	L	G	L	P	Y	R	V	V	G	I	V	S	G	E	L	N	N	A	A	A	K	K	Y	D	L	E	A	W	F	P	F	Q	Q	E	Y	K	E	L	V	S	C	S	N	C	T	D	Y	Q	S	R	N	L	E	I	R	C	.	.	.	.	.	G	I	K	K
Template Known Secondary structure																	T	T										G	G	G			T	T		S										T	T	T	T												T	T							T				.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y	M	N	G	L	E	Y	I
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		Y	V	H	C	L	N	S	T	L	S	A	T	E	R	T	I	C	C	I	L	E	N	Y	Q	K	E	D	G	.	L	V	I	P	E	V	L	R	K	Y	I	P	G	E	P	E	F
Template Known Secondary structure		B																									T	T		.					G	G	G	G	G	G	S	T	T			S
Template Predicted Secondary structure																														.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.		.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.