Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 1 Aligned Residues 421 % Identity 34% Template c3lssA_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.			.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.
Predicted Secondary structure													.	.																.																																										.
Query SS confidence													.	.																.																																										.
Query Sequence		M	L	D	P	N	L	L	R	N	E	P	.	.	D	A	V	A	E	K	L	A	R	R	G	F	K	L	D	.	V	D	K	L	G	A	L	E	E	R	R	K	V	L	Q	V	K	T	E	N	L	Q	A	E	R	N	S	R	S	K	S	I	G	Q	A	K	A	R	G	E	D	.	I	E	P	L	R	L	E	V	N
Query Conservation													.	.																.																																										.
Alig confidence													.	.																.																																										.
Template Conservation
Template Sequence		V	L	D	I	Q	L	F	R	D	E	T	G	A	N	I	I	R	E	S	Q	R	R	R	F	A	D	P	D	I	V	D	A	I	I	E	A	D	K	K	W	R	R	T	Q	F	L	T	E	A	S	K	K	L	I	N	I	C	S	K	A	V	G	A	K	K	K	A	K	E	A	C	V	L	Q	L	K	Q	L	S	K
Template Known Secondary structure					G	G	G	G	G	S														T	T			T	T																																							T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		K	L	G	E	E	L	D	A	A	K	A	E	L	D	A	L	Q	A	E	I	R	D	I	A	L	T	I	P	N	L	P	A	D	E	V	P	V	G	K	D	.	E	N	D	N	V	E	V	S	R	W	G	T	P	R	E	F	D	F	E	V	R	D	H	V	T	L	G	E	M	H	S	G	L	D	F	A	A	A	V
Query Conservation																																										.
Alig confidence																																										.															.	.
Template Conservation																																																									.	.
Template Sequence		D	L	S	D	Q	V	A	G	L	A	K	E	A	Q	Q	L	E	E	E	R	D	K	L	M	L	N	V	G	N	I	L	H	E	S	V	P	I	A	Q	D	E	E	T	G	N	T	V	V	R	T	F	G	N	T	T	.	.	K	R	A	K	L	N	H	V	S	I	M	E	R	L	G	M	M	D	T	S	K	A	V
Template Known Secondary structure																										T	T							T	T	S				S													S		T	T	.	.				S	S									T	T					S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
			156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L
Query Conservation		.
Alig confidence		.																														.																																										.	.	.	.	.
Template Conservation																																.																																										.	.	.	.	.
Template Sequence		T	S	M	A	G	G	R	S	Y	V	L	K	G	G	L	V	Q	L	Q	V	A	L	V	S	Y	S	L	D	F	L	.	V	K	R	G	Y	T	P	F	Y	P	P	F	F	L	N	R	D	V	M	G	E	V	A	Q	L	S	Q	F	D	E	E	L	Y	Q	V	S	G	D	G	D	K	.	.	.	.	.	K	Y	L
Template Known Secondary structure							T	T																								.		T	T	T								S											S								T						S	S	S	S		.	.	.	.	.
Template Predicted Secondary structure																																.																																										.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	.	.	E	D	S	M	A	A	L	E	E	M	T	G	H	A
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		I	A	T	S	E	M	P	I	A	A	Y	H	R	G	R	W	F	T	E	L	K	E	P	L	K	Y	A	G	M	S	T	C	F	R	K	E	A	G	A	H	G	R	D	T	L	G	I	F	R	V	H	Q	F	D	K	I	E	Q	F	V	V	C	S	P	R	Q	E	E	S	W	R	H	L	E	D	M	I	T	T	S
Template Known Secondary structure			S	S	T								T	T	T				S			S	S															T	T		S	S	S			S	T	T	S	S		S													S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	.	D	K	K	T	R	L	V	H	T	L	N	G	S
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		E	E	F	N	K	S	L	G	L	P	Y	R	V	V	N	I	C	S	G	A	L	N	N	A	A	A	K	K	Y	D	L	E	A	W	F	P	A	S	G	A	F	R	E	L	V	S	C	S	N	C	T	D	Y	Q	S	Q	S	V	N	C	R	Y	G	P	N	L	R	Q	N	V	K	E	Y	C	H	M	L	N	G	T
Template Known Secondary structure									T										T	T	T			S	S		S										T	T	T	T												T	T							T				S	S						S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y	M	N	G	L	E	Y	I	G
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		L	C	A	I	T	R	T	M	C	C	I	C	E	N	Y	Q	T	E	E	G	.	V	V	I	P	D	V	L	R	P	Y	M	M	G	I	E	M	I	R
Template Known Secondary structure																	B		S	S		.					G	G	G	G	G	G	T	T	T
Template Predicted Secondary structure																						.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.