Job Description P0A8L1 Confidence 99.97% Date Thu Jan 5 11:08:05 GMT 2012 Rank 34 Aligned Residues 259 % Identity 13% Template c3ikmC_ PDB info PDB header:transferase Chain: C: PDB Molecule:dna polymerase subunit gamma-2; PDBTitle: crystal structure of human mitochondrial dna polymerase2 holoenzyme Resolution 3.24 Å

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		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																						.	.	.	.						.
Query SS confidence																						.	.	.	.						.
Query Sequence		V	T	L	G	E	M	H	S	G	L	D	F	A	A	A	V	K	L	T	G	.	.	.	.	S	R	F	V	V	.	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A
Query Conservation																						.	.	.	.						.
Alig confidence										.												.	.	.	.						.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	I	C	Q	R	R	H	.	F	L	S	G	S	K	Q	Q	L	S	R	D	S	L	L	S	G	C	H	P	G	F	G	P	L	G	V	E	L	R	K	N	L	A	A	E	W	W	T	S	V	V	V	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	F	P	V	D	A	L	H	H	K	P
Template Known Secondary structure							G	G	G	.	S	S				S	T	T	T	T							T		S																									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.			B							S
Template Predicted Secondary structure										.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.														.	.	.	.	.	.	.	130	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	.	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V
Query Conservation																																				.
Alig confidence														.	.	.	.	.																		.																												.
Template Conservation														.	.	.	.	.																																														.
Template Sequence		G	P	L	L	P	G	D	S	A	F	R	S	.	.	.	.	.	G	K	L	R	E	N	L	L	H	G	A	L	E	H	Y	V	N	C	L	D	L	V	N	K	R	L	P	Y	G	L	A	Q	I	G	V	C	F	H	P	V	F	D	T	K	Q	.	I	R	N	G	V	K	S	I	G	E	K	T	E	A	S	L	V
Template Known Secondary structure				S	S	S	S				S	S		.	.	.	.	.			S		S																G	G	G	S						B																.	S	S	S		S
Template Predicted Secondary structure														.	.	.	.	.																																														.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		Q	I	V	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	.	.
Query Conservation																																																																																.	.
Alig confidence																																								.																		.	.																					.	.
Template Conservation																																								.																		.	.
Template Sequence		W	F	T	P	P	R	T	S	N	Q	W	L	D	F	W	L	R	H	R	L	Q	W	W	R	K	F	A	M	S	P	S	N	F	S	S	S	D	C	.	Q	D	E	E	G	R	K	G	N	K	L	Y	Y	N	F	P	W	.	.	G	K	E	L	I	E	T	L	W	N	L	G	D	H	E	L	L	H	M	Y	P	G
Template Known Secondary structure						T	T																						S	S	T	T	S							.			S	S	S											T	T	.	.												T	T	S	S					S
Template Predicted Secondary structure																																								.																		.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
				372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.													.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	.	.	.	.	.	.	.	.	.	.	.	.	I	E	V	P	E	V	L	R	P	Y
Query Conservation		.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		N	V	S	K	L	H	G	R	D	G	R	K	N	V	V	P	C	V	L	S	V	N	.	G	D	L	D	R	G	M	L	A	Y	L	Y	D	S	F	Q	L	T	E	N	S	F	T	R	K	K	N	L	H	R	K	V	L	K	L	H	P	C	L	A	P	I
Template Known Secondary structure		S	S		S				B	S	S	S	S	B										.				S															S	T	T	T	S	S	S		S										T	T	T	S	S
Template Predicted Secondary structure																								.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions