Job Description P0A8L1 Confidence 44.88% Date Thu Jan 5 11:08:05 GMT 2012 Rank 111 Aligned Residues 185 % Identity 19% Template c3hxxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp Resolution 2.11 Å

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		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E
Query Conservation
Alig confidence													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		A	E	I	R	Q	A	F	L	D	F	F	.	H	S	K	G	H	Q	V	V	A	S	S	S	L	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	N	D	P	T	L	L	F	T	N	A	G	M	N	Q	F	K	D	V	F	L	G	L	D	K	R	.
Template Known Secondary structure													.			T	T									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	S		S	S			S	T	T	G	G	G						T	S	S			.
Template Predicted Secondary structure													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																											.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
		254	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.												.	.	.	.	.																													.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.												.	.	.	.	.																													.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	L	P	I	.	K	M	T	A	H	T	P	C	F	R	S	.	.	.	.	.	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	.	.	P	E	D	S	M	A	A	L	E	E	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.												.	.	.	.	.																													.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.			.												.	.	.	.	.											.	.	.																.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																														.	.	.
Template Sequence		.	.	.	N	Y	S	R	A	T	T	S	Q	R	C	V	R	A	G	G	K	H	N	D	L	E	N	V	G	Y	T	A	R	.	.	.	H	H	T	F	F	E	M	L	G	N	F	S	F	G	D	Y	F	K	L	D	A	I	L	F	A	W	L	L	L	T	S	E	K	W	F	A	L	P	K	E	R	L	W	V	T
Template Known Secondary structure		.	.	.	S		S													T	T				T	T	T	T	T	T	S	S	S	.	.	.			S										S	S	S																	T	T	T	T				G	G	G
Template Predicted Secondary structure		.	.	.																														.	.	.
Template SS confidence
					57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
								310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330												.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350																.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	H	A	E	K	V	L	Q	L	L	G	L	P	.	Y	R	K	I	I	L	C	T	.	.	.	.	.	.	.	.	.	.	.	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	Y	R	E	I
Query Conservation		.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.														.									.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	E	S	D	D	E	A	Y	E	I	W	E	K	E	V	G	I	P	R	E	R	I	I	R	I	G	D	N	K	G	A	P	Y	A	S	D	N	F	W	Q	M	G	D	T	G	P	C	G	P	C	T	E	I	F	Y	D	H	G	D	H	I	W	G	G	P	P	G	S	P	E	E	D	G	D	R	Y	I	E	I
Template Known Secondary structure				T	T											T	T				G	G	G						S	T	T	S	S	T	T		B	T	T				S	S	S	S															T	T	S					T	T	S	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	.	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V
Query Conservation																				.
Alig confidence						.	.	.	.		.	.	.	.	.	.				.
Template Conservation						.	.	.	.		.	.	.	.	.	.
Template Sequence		W	N	I	V	.	.	.	.	F	.	.	.	.	.	.	M	Q	F	N	R	Q	A	D	G	T	M	E	P	L	P	K	P	S	V	D	T	G	M	G	L	E	R	I	A	A	V	L
Template Known Secondary structure						.	.	.	.		.	.	.	.	.	.							T	T	S
Template Predicted Secondary structure						.	.	.	.		.	.	.	.	.	.
Template SS confidence
		211	.	.	.					.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions