Job Description P0A8L1 Confidence 97.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 81 Aligned Residues 190 % Identity 15% Template c3cmqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylalanyl-trna synthetase, mitochondrial; PDBTitle: crystal structure of human mitochondrial phenylalanine trna2 synthetase Resolution 2.20 Å

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		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200															.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		L	W	L	I	K	E	R	V	K	E	H	F	Y	K	Q	Y	V	G	R	F	G	T	P	L	F	S	V	Y	D	N	L	S	P	V	V	T	T	W	Q	N	F	D	S	L	L	I	P	A	D	H	P	S	R	K	K	G	D	N	Y	Y	L	N	R	T	.	.	.	.	.	.	.	.	H	M	L	R	A	H	T	S
Template Known Secondary structure																					S	S	S											S								T	G	G	G	T			T	T		G	G	G		G	G	G	S		B	S	S	S	S	.	.	.	.	.	.	.	.					S	S	G	G
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																																.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	.	.	Q	F	D	K	V	E	M	V	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.						.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Sequence		A	H	Q	W	D	L	L	H	A	G	L	D	.	.	.	.	.	.	.	A	F	L	V	V	G	D	V	Y	R	R	D	Q	.	.	.	.	.	.	.	.	.	I	D	S	Q	H	Y	P	I	F	H	Q	L	E	A	V	R	L	F	S	K	H	E	L	F	A	G	I	K	D	G	E	S	L	Q	L	F	E	Q	S
Template Known Secondary structure		G	G							T	T		S	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.		B	T	T	B		S																	T	T	T	S	T	T	G	G	G			S	B
Template Predicted Secondary structure														.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.										.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
											296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																												.
Query SS confidence		.	.	.	.	.	.	.	.	.																												.
Query Sequence		.	.	.	.	.	.	.	.	.	V	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	.	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F
Query Conservation		.	.	.	.	.	.	.	.	.																												.
Alig confidence		.	.	.	.	.	.	.	.	.																												.																								.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		S	R	S	A	H	K	Q	E	T	H	T	M	E	A	V	K	L	V	E	F	D	L	K	Q	T	L	T	R	L	M	A	H	L	F	G	D	E	L	E	I	R	W	V	D	C	Y	F	P	F	T	H	P	S	F	E	M	E	I	N	F	.	.	.	.	H	G	E	W	L	E	V	L	G	C	G	V	M	E	Q	Q
Template Known Secondary structure					S	S			T	T	B																										T	T											T	T												.	.	.	.	T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V
Query Conservation
Alig confidence									.	.	.	.	.	.									.	.	.	.	.
Template Conservation									.	.	.	.	.	.									.	.	.	.	.
Template Sequence		L	V	N	S	A	G	A	.	.	.	.	.	.	Q	D	R	I	G	W	A	F	.	.	.	.	.	G	L	G	L	E	R	L	A	M	I	L
Template Known Secondary structure						T	T		.	.	.	.	.	.	T	T							.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.							.	270	.	.	.	.	.	.						.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions