Phyre 2 alignment of P0A8L1 with c2i4lC

Job Description P0A8L1
Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012

Rank 26 Aligned Residues 274

% Identity 19% Template c2i4lC_

PDB info PDB header:ligase Chain: C: PDB Molecule:proline-trna ligase; PDBTitle: rhodopseudomonas palustris prolyl-trna synthetase

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E	F	D	F	E	V	R	D	H	V	T	L	G	E	M	H	S	G	L	D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q
Query Conservation
Alig confidence														.									.	.	.	.	.	.																												.
Template Conservation														.									.	.	.	.	.	.																												.
Template Sequence	N	P	K	E	A	E	I	V	S	H	R	L	M	.	L	R	A	G	M	L	R	Q	.	.	.	.	.	.	E	A	A	G	I	Y	A	W	L	P	L	G	H	R	V	L	K	K	I	E	Q	I	V	R	E	E	Q	.	N	R	A	G	A	I	E	L	L	M	P	T	L	Q	L	A	D	L	W	R	E	S	G	R
Template Known Secondary structure			T	T			S							.			T	T					.	.	.	.	.	.			T	T																								.			T	T								S											T
Template Predicted Secondary structure														.									.	.	.	.	.	.																												.
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K
Query Conservation
Alig confidence																		.	.	.	.																																										.	.	.	.
Template Conservation																		.	.	.	.																																										.	.	.	.
Template Sequence	Y	D	A	Y	G	P	E	M	L	R	I	A	D	R	H	K	R	.	.	.	.	E	L	L	Y	G	P	T	N	E	E	M	I	T	E	I	F	R	A	Y	I	K	S	Y	K	S	L	P	L	N	L	Y	H	I	Q	W	K	F	R	D	E	Q	.	.	.	.	R	P	R	F	G	V	M	R	G	R	E	F	L	M
Template Known Secondary structure				S		T	T	S						T	T			.	.	.	.						S																B	G	G	G		S														S	.	.	.	.	S		B	T	G	G	G	B		S
Template Predicted Secondary structure																		.	.	.	.																																										.	.	.	.
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.					.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.

	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure										.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	E	M	V	Q	I	V	R	P	.	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	D	A	Y	S	F	D	V	D	E	A	G	A	R	K	S	Y	N	K	M	F	V	A	Y	L	R	T	F	A	R	M	G	L	K	A	I	P	M	R	A	E	T	G	P	I	G	G	D	L	S	H	E	F	I	V	L	A	E	T	G	E	S	G	V	Y	I	D	R	D	V	L	N	L	P	V	P	D	E	N	V
Template Known Secondary structure								S	S																						T	T												T	T			S										T	T		S							G	G	G	G	G						T	T
Template Predicted Secondary structure
Template SS confidence
	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

																																										352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	Y	D	G	D	L	T	P	I	I	K	Q	W	T	S	V	Y	A	A	T	E	D	V	H	E	P	A	R	Y	E	S	E	V	P	E	A	N	R	L	N	T	R	G	I	E	V	G	Q	I	F	Y	F	G	T	K	Y	S	D	S	M	K	A	N	V	T	G	P	D	G	T	D	A	P	I	H	G	G	S	Y	G
Template Known Secondary structure		T	T	S										T	S	S					T	T	T										S		G	G	G																	T						T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y
Query Conservation
Alig confidence	.	.																				.
Template Conservation	.	.																				.
Template Sequence	.	.	V	G	V	S	R	L	L	G	A	I	I	E	A	C	H	D	D	N	G	.	I	I	W	P	E	A	V	A	P	F
Template Known Secondary structure	.	.														S			T	T		.					T	T	T		S
Template Predicted Secondary structure	.	.																				.
Template SS confidence
			318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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