Job Description P0A8L1 Confidence 98.93% Date Thu Jan 5 11:08:05 GMT 2012 Rank 55 Aligned Residues 222 % Identity 15% Template c2du7C_ PDB info PDB header:ligase Chain: C: PDB Molecule:o-phosphoseryl-trna synthetase; PDBTitle: crystal structure of methanococcus jannacshii o-phosphoseryl-trna2 synthetase Resolution 3.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	Y	G	T	G	Q	L	P	K	F	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																														.						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																														.						.
Template Sequence		D	K	H	I	D	N	K	Y	P	R	L	K	P	V	Y	G	K	P	H	P	V	M	E	T	I	E	R	L	.	R	Q	A	Y	L	.	R	M	G	F	E	E	M	I	N	P	V	I	V	D	E	M	E	I	Y	K	Q	F	G	P	E	A	M	A	V	L	D	R	C	F	Y	L	A	G	L	P	R	P	D	V	G
Template Known Secondary structure				T	T	T	T	S	S	S	S	S																		.						.	T	T	T								S											T		T	T					G	G	G													S
Template Predicted Secondary structure																														.						.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
																									214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																																			.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	N	E	K	V	E	I	I	K	N	L	G	I	D	I	D	E	E	K	K	E	R	L	R	E	V	L	H	L	Y	K	K	G	A	I	D	G	D	D	L	V	F	E	I	A	K	A	L	N	V	S	N	E	M	G	L	K	V	L	E	T	A	F	P	E	F	K	D	L	K	P	E	S	T	T	L	T	L	R
Template Known Secondary structure		S	S	S	T	T	S			S	S		S					S				S	S	S				S				S	S	S	S				S	S	S			S				S	S	S	S			S		S				S	S	S	S	S		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	.	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V
Query Conservation																																					.
Alig confidence																																					.					.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.																.	.	.	.
Template Sequence		S	H	M	T	S	G	W	F	I	T	L	S	S	L	I	K	K	R	K	L	P	L	K	L	F	S	I	D	R	C	F	R	R	E	Q	R	E	D	R	S	.	.	.	.	.	.	.	H	L	M	S	Y	H	S	A	S	C	V	V	V	G	E	.	.	.	.	D	V	S	V	D	D	G	K	V	V	A	E	G	L
Template Known Secondary structure		S	T	T										T	T	T	T	T	S		S	S														S	S		S	S	S	.	.	.	.	.	.	.			S												T	.	.	.	.	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.
		316	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		L	Q	L	L	G	L	P	.	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A
Query Conservation									.
Alig confidence									.																																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Q	F	G	F	T	K	F	K	F	K	P	D	E	K	K	S	K	Y	Y	T	P	E	T	Q	T	E	V	Y	A	Y	H	P	K	L	G	E	W	I	E	V	A	T	F	G	V	Y	S	P	I	A	L	A	K	Y	N	I	D	V	.	.	.	.	.	.	.	.	.	.	.	.	P	V	M	N	L	G	L	G
Template Known Secondary structure			G	G	G	T										T	T			T	T	B		T	T	T									S	S	S	S		S									B								T	T			S	.	.	.	.	.	.	.	.	.	.	.	.								B
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.													.	.	.	.	330	.	.	.
		395	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	R	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions