Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 2 Aligned Residues 422 % Identity 38% Template c2dq0A_ PDB info PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		M	L	D	P	N	L	L	R	N	E	P	D	A	V	A	E	K	L	A	R	R	G	F	K	L	D	.	.	.	V	D	K	L	G	A	L	E	E	R	R	K	V	L	Q	V	K	T	E	N	L	Q	A	E	R	N	S	R	S	K	S	I	G	Q	A	K	A	R	G	E	D	I	E	P	L	R	L	E	V	N	K
Query Conservation																												.	.	.
Alig confidence																												.	.	.
Template Conservation
Template Sequence		M	L	D	I	K	L	I	R	E	N	P	E	L	V	K	N	D	L	I	K	R	G	E	L	E	K	V	K	W	V	D	E	I	L	K	L	D	T	E	W	R	T	K	L	K	E	I	N	R	L	R	H	E	R	N	K	I	A	V	E	I	G	K	R	R	K	K	G	E	P	V	D	E	L	L	A	K	S	R	E
Template Known Secondary structure																							T		G	G	G	T																																							T	S				T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																					.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	E	E	L	D	A	A	K	A	E	L	D	A	L	Q	A	E	I	R	D	I	A	L	T	I	P	N	L	P	A	D	E	V	P	V	G	K	D	E	N	D	N	V	E	V	S	R	W	G	T	P	R	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	E	V	R
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	K	R	I	G	E	L	E	N	E	V	E	E	L	K	K	K	I	D	Y	Y	L	W	R	L	P	N	I	T	H	P	S	V	P	V	G	K	D	E	N	D	N	V	P	I	R	F	W	G	K	A	R	V	W	K	G	H	L	E	R	F	L	E	Q	S	Q	G	K	M	E	Y	E	I	L	E	W	K	P	K
Template Known Secondary structure																									T	T	S						T	T	S				S	S	G	G	G								S						G	G	G									T	T		S						S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	V	T	L	G	E	M	H	S	G	L	D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		L	H	V	D	L	L	E	I	L	G	G	A	D	F	A	R	A	A	K	V	S	G	S	R	F	Y	Y	L	L	N	E	I	V	I	L	D	L	A	L	I	R	F	A	L	D	R	L	.	I	E	K	G	F	T	P	V	I	P	P	Y	M	V	R	R	F	V	E	E	G	S	T	S	F	E	D	F	E	D	V	I
Template Known Secondary structure										T	T				S							T		T	T																								.			T	T								S									T	T	S		T	T					T
Template Predicted Secondary structure																																																	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R
Query Conservation
Alig confidence									.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		Y	K	V	E	D	E	D	.	.	.	.	.	.	.	L	Y	L	I	P	T	A	E	H	P	L	A	G	M	H	A	N	E	I	L	D	G	K	D	L	P	L	L	Y	V	G	V	S	P	C	F	R	K	E	A	G	T	A	G	K	D	T	K	G	I	F	R	V	H	Q	F	H	K	V	E	Q	F	V	Y	S	R
Template Known Secondary structure			B		T	T	S	S	.	.	.	.	.	.	.					S	S	T							T	T	T	T					T	T	T		S														T	T		S	S		S			S	S	S	S		S
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.								.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	E	S	W	E	W	H	E	K	I	I	R	N	A	E	E	L	F	Q	E	L	E	I	P	Y	R	V	V	N	I	C	T	G	D	L	G	Y	V	A	A	K	K	Y	D	I	E	A	W	M	P	G	Q	G	K	F	R	E	V	V	S	A	S	N	C	T	D	W	Q	A	R	R	L	N	I	R	F	R	D	R
Template Known Secondary structure		T	T	T																			T	T										G	G	G	S		S	S		S										T	T	T	T												T	T	T	T					T					S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y	M	N	G	L	E	Y	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	E	K	P	R	Y	V	H	T	L	N	S	T	A	I	A	T	S	R	A	I	V	A	I	L	E	N	H	Q	E	E	D	G	T	V	R	I	P	K	V	L	W	K	Y	T	G	F	K	E	I	V	P
Template Known Secondary structure		T	T	S																										S	B		T	T	S						G	G	G					S		S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.