Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 3 Aligned Residues 422 % Identity 28% Template c1wleB_ PDB info PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate Resolution 1.65 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.
Predicted Secondary structure																											.	.	.																																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.																																											.	.	.	.	.	.	.	.
Query Sequence		M	L	D	P	N	L	L	R	N	E	P	D	A	V	A	E	K	L	A	R	R	G	F	K	L	.	.	.	D	V	D	K	L	G	A	L	E	E	R	R	K	V	L	Q	V	K	T	E	N	L	Q	A	E	R	N	S	R	S	K	S	I	G	Q	A	K	A	R	G	E	D	.	.	.	.	.	.	.	.	I	E
Query Conservation																											.	.	.																																											.	.	.	.	.	.	.	.
Alig confidence																											.	.	.																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	D	M	E	S	L	C	A	Y	P	E	D	A	A	R	A	L	D	L	R	K	G	E	L	R	S	K	D	L	P	G	I	I	S	T	W	Q	E	L	R	Q	L	R	E	Q	I	R	S	L	E	E	E	K	E	A	V	T	E	A	V	R	A	L	V	V	N	Q	D	N	S	Q	V	Q	Q	D	P	Q	Y	Q
Template Known Secondary structure											S												T		S			G	G	G																													T					T	S	S	S	S	S	T	T	T	T	G	G	G	S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	R	L	E	V	N	K	L	G	E	E	L	D	A	A	K	A	E	L	D	A	L	Q	A	E	I	R	D	I	A	L	T	I	P	N	L	P	A	D	E	V	P	V	G	K	D	E	N	D	N	V	E	V	S	R	W	G	T	P	R	E	F	D	F	E	V	R	D	H	V	T	L	G	E	M	H	S	G	L
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		S	L	R	A	R	G	R	E	I	R	K	Q	L	T	L	L	Y	P	K	E	A	Q	L	E	E	Q	F	Y	L	R	A	L	R	L	P	N	Q	T	H	P	D	V	P	V	G	.	D	E	S	Q	A	R	V	L	H	V	V	G	D	K	P	A	F	S	F	Q	P	R	G	H	L	E	I	A	E	K	L	D	I	I
Template Known Secondary structure		S	S	S	T	T	T																										T	T	S						T	T				S	.	S	G	G	G								S						S	S												T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		D	F	A	A	A	V	K	L	T	G	S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	.	L	F	H	T	R	P	L	E	E	E	A	D
Query Conservation																																																																					.
Alig confidence																																					.																																.											.	.
Template Conservation																																					.																																											.	.
Template Sequence		R	Q	K	R	L	S	H	V	S	G	H	R	S	Y	Y	L	R	G	A	G	A	L	L	Q	H	G	L	V	N	F	T	L	N	K	L	.	I	H	R	G	F	T	P	M	T	V	P	D	L	L	R	G	V	V	F	E	G	C	G	M	T	P	N	A	K	P	S	Q	I	Y	N	I	D	P	S	R	F	E	.	.
Template Known Secondary structure				T	T		T	T	T	T		T	T						T																		.			T	T								S											T			T	T	S	S	S		S	S		B			T	T	T	S	S	.	.
Template Predicted Secondary structure																																					.																																											.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		T	S	N	Y	A	L	I	P	T	A	E	V	P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	.	.	E	D	S	M	A	A	L	E
Query Conservation																																																																								.	.
Alig confidence		.	.																																											.																										.	.
Template Conservation		.	.																																											.
Template Sequence		.	.	D	L	N	L	A	G	T	A	E	V	G	L	A	G	Y	F	M	D	H	S	V	A	F	R	D	L	P	I	R	M	V	C	S	S	T	C	Y	R	A	E	T	D	.	T	G	K	E	P	W	G	L	Y	R	V	H	H	F	T	K	V	E	M	F	G	V	T	G	P	G	L	E	Q	S	S	E	L	L	E
Template Known Secondary structure		.	.	S					S	S										T	T					G	G	G		S															S	.	S					S	S	S	T	T		S													S	S
Template Predicted Secondary structure		.	.																																											.
Template SS confidence
				276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	T	G	H	A	E	K	V	L	Q	L	L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		E	F	L	S	L	Q	M	E	I	L	T	E	L	G	L	H	F	R	V	L	D	M	P	T	Q	E	L	G	L	P	A	Y	R	K	F	D	I	E	A	W	M	P	G	R	G	R	F	G	E	V	T	S	A	S	N	C	T	D	F	Q	S	R	R	L	H	I	M	F	Q	T	E	A	G	.	E	L	Q	F	A	H
Template Known Secondary structure														T	T										G	G	G	S	T	T	T		S										T	T	T	T												T	T							T						T	T		.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y	M	N	G	L	E	Y	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	N	A	T	G	C	A	V	P	R	L	L	I	A	L	L	E	S	Y	Q	Q	K	D	G	S	V	L	V	P	P	A	L	Q	P	Y	L	G	T	D	R	I	T	T
Template Known Secondary structure																						B		T	T	S						G	G	G					S	S	S
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.