Job Description P0A8L1 Confidence 100.00% Date Thu Jan 5 11:08:05 GMT 2012 Rank 5 Aligned Residues 416 % Identity 38% Template c1sryB_ PDB info PDB header:ligase(synthetase) Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	D	P	N	L	L	R	N	E	P	D	A	V	A	E	K	L	A	R	R	G	F	K	L	D	V	D	K	L	G	A	L	E	E	R	R	K	V	L	Q	V	K	T	E	N	L	Q	A	E	R	N	S	R	S	K	S	I	G	Q	A	K	A	R	G	E	D	I	E	P	L	R	L	E	V	N	K	L	G	E
Query Conservation
Alig confidence																																																													.	.
Template Conservation																																																													.	.
Template Sequence		M	V	D	L	K	R	L	R	Q	E	P	E	V	F	H	R	A	I	R	E	K	G	V	A	L	D	L	E	A	L	L	A	L	D	R	E	V	Q	E	L	K	K	R	L	Q	E	V	Q	T	E	R	N	Q	V	A	K	R	V	P	.	.	K	A	P	P	E	E	K	E	A	L	I	A	R	G	K	A	L	G	E
Template Known Secondary structure																						T	T																																			T	S	T	.	.	T	S
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	D	A	A	K	A	E	L	D	A	L	Q	A	E	I	R	D	I	A	L	T	I	P	N	L	P	A	D	E	V	P	V	G	K	D	E	N	D	N	V	E	V	S	R	W	G	T	P	R	E	F	D	F	E	V	R	D	H	V	T	L	G	E	M	H	S	G	L	D	F	A	A	A	V	K	L	T	G	S
Query Conservation
Alig confidence																																							.																																		.
Template Conservation																																							.																																		.
Template Sequence		E	A	K	R	L	E	E	A	L	R	E	K	E	A	R	L	E	A	L	L	L	Q	V	P	L	P	P	W	P	G	A	P	V	G	G	E	E	.	A	N	R	E	I	K	R	V	G	G	P	P	E	F	S	F	P	P	L	D	H	V	A	L	M	E	K	N	G	W	W	E	P	.	R	I	S	Q	V	S	G	S
Template Known Secondary structure																						T	T							T	T	S		S	S	S	G	G	.	G								S						S	S													T		B		T	.	T					T		S
Template Predicted Secondary structure																																							.																																		.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E	V
Query Conservation
Alig confidence																										.																																								.	.	.	.	.	.	.
Template Conservation																										.																																								.	.	.	.	.	.	.
Template Sequence		R	S	Y	A	L	K	G	D	L	A	L	Y	E	L	A	L	L	R	F	A	M	D	F	M	.	A	R	R	G	F	L	P	M	T	L	P	S	Y	A	R	E	K	A	F	L	G	T	G	H	F	P	A	Y	R	D	Q	V	W	A	I	A	E	T	D	.	.	.	.	.	.	.	L	Y	L	T	G	T	A	E	V
Template Known Secondary structure		S				B																				.		T	T	T								S											T		T	T	T	T	G	G	G			B		T	T	S	S	.	.	.	.	.	.	.					S	S	T
Template Predicted Secondary structure																										.																																								.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		P	L	T	N	L	V	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	.	.	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L
Query Conservation																																																										.	.
Alig confidence																																																										.	.
Template Conservation
Template Sequence		V	L	N	A	L	H	S	G	E	I	L	P	Y	E	A	L	P	L	R	Y	A	G	Y	A	P	A	F	R	S	E	A	G	S	F	G	K	D	V	R	G	L	M	R	V	H	Q	F	H	K	V	E	Q	Y	V	L	T	E	A	S	L	E	A	S	D	R	A	F	Q	E	L	L	E	N	A	E	E	I	L	R	L
Template Known Secondary structure						T	T	T	T					G	G	G		S															S	S		T	T	S	S		S	S	S	S		S													S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	L	P	Y	R	K	I	I	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q	A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		L	E	L	P	Y	R	L	V	E	V	A	T	G	D	M	G	P	G	K	W	R	Q	V	D	I	E	V	Y	L	P	S	E	G	R	Y	R	E	T	H	S	C	S	A	L	L	D	W	Q	A	R	R	A	N	L	R	Y	R	D	P	E	G	.	R	V	R	Y	A	Y	T	L	N	N	T	A	L	A	T	P	R	I
Template Known Secondary structure			T										T	T	T	S		T	T		S										G	G	G	T													T	T	T					T						T	T	S	.																T
Template Predicted Secondary structure																																																															.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y	M	N	G	L	E	Y	I	G
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		L	A	M	L	L	E	N	H	Q	L	Q	D	G	R	V	R	V	P	Q	A	L	I	P	Y	M	.	G	K	E	V	L	E
Template Known Secondary structure										B		T	T	S						G	G	G					.	S	S	S
Template Predicted Secondary structure																											.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.