Job Description P0A8L1 Confidence 99.78% Date Thu Jan 5 11:08:05 GMT 2012 Rank 39 Aligned Residues 215 % Identity 18% Template c1qe0B_ PDB info PDB header:ligase Chain: B: PDB Molecule:histidyl-trna synthetase; PDBTitle: crystal structure of apo s. aureus histidyl-trna synthetase Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	F	V	V	M	K	G	Q	I	A	R	M	H	R	A	L	S	Q	F	M	L	D	L	H	T	E	Q	H	G	Y	S	E	N	Y	V	P	Y	L	V	N	Q	D	T	L	Y	G	T	G	Q	L	P	K	F	A	G	D	L	F	H	T	R	P	L	E	E	E	A	D	T	S	N	Y	A	L	I	P	T	A	E
Query Conservation
Alig confidence																											.																					.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																											.																					.	.	.	.	.	.	.	.	.														.	.	.	.
Template Sequence		R	G	T	Q	D	I	L	P	E	D	S	K	K	W	R	Y	I	E	N	Q	L	D	E	L	M	.	T	F	Y	N	Y	K	E	I	R	T	P	I	F	E	S	T	D	L	F	A	.	.	.	.	.	.	.	.	.	R	E	M	Y	T	F	K	D	K	G	D	R	S	.	.	.	.	I	T	L	R	P	E	G	T
Template Known Secondary structure		T	T																								.				T								S									.	.	.	.	.	.	.	.	.							S							.	.	.	.					S		S
Template Predicted Secondary structure																											.																					.	.	.	.	.	.	.	.	.														.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.
		240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		V	P	L	T	N	L	V	.	R	G	E	I	I	D	E	D	D	L	P	I	K	M	T	A	H	T	P	C	F	R	S	E	A	G	S	Y	G	R	D	T	R	G	L	I	R	M	H	Q	F	D	K	V	E	M	V	Q	I	V	R	P	E	D	S	M	A	A	L	E	E	M	T	G	H	A	E	K	V	L	Q	L
Query Conservation									.
Alig confidence									.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		A	A	V	V	R	S	Y	I	E	H	K	M	Q	G	N	P	N	Q	P	I	K	L	Y	Y	N	G	P	M	F	R	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	F	N	Q	F	G	V	E	A	I	G	A	E	N	P	S	V	.	.	D	A	E	V	L	A	M	V	M	H	I	Y	Q	S
Template Known Secondary structure											T	T	G	G	G		S	S		S														.	.	.	.	.	.	.	.	.	.	.	.	.	.												S							.	.														T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.															.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.																																	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	L	P	Y	R	K	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	T	G	D	M	G	F	G	A	C	K	T	Y	D	L	E	V	W	I	P	A	Q	N	T	Y	R	E	I	S	S	C	S	N	V	W	D	F	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	L	K	H	L	K	L	V	I	N	S	V	G	D	M	A	S	S	K	A	Y	Y	E	Q	V	K	A	Y	L	D	D	L	G	I	P	Y	T	E	D	P	N	L	V	R	G	L	D	Y	Y	T	H	T	A	F	E	L	M	M	D	N	P	N	Y	D	G	A	I	T	T	L	C	G	G	G	R	Y	N	G	L
Template Known Secondary structure		T	T														S																		T							T	T						T	T			S										T	T	S	T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	M	Q	A	R	C	R	S	K	S	D	K	K	T	R	L	V	H	T	L	N	G	S	G	L	A	V	G	R	T	L	V	A	V	M	E	N	Y	Q	Q	A	D	G	R	I	E	V	P	E	V	L	R	P	Y
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		L	E	L	L	D	G	P	S	E	.	.	.	.	.	.	.	.	.	.	.	T	G	I	G	F	A	L	S	I	E	R	L	L	L	A	L	E	E	E	G	.	.	.	.	.	.	.	I	E	L	D	I	E	E	N	L
Template Known Secondary structure					T	T					.	.	.	.	.	.	.	.	.	.	.																			T	T	.	.	.	.	.	.	.				S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.												.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.								.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions